Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00942 ATGGGAAAGTGCTCCTTCAAGGACTCTCTTAAAGCTCTGGAAGCTGATATTCAGTATGCTAATACCCTGGCATTGGACTACCCAAGGGACAGAGACGGAGGATGCTTTCAGATGAGGATATCTTACAGTTCAGCAGCCCCTATTTTTCTATTTCTTCTTCAATGGACTGATTACCGCTTGGCTGGTGCTCTGGGTTTGCTGAGAGTTCTAATTTATGTGAGTTATGGAAATGGGAAGAATACTATGTCAGTATATGAAAGGAAAGCAAGCATTAGACAATTTTACTCTGTTATATTTCCTGCTCTGTTGCAACTTGAGAAAGGCATCACGGATTTGGAGGAAAGGAAACAGAAAGAAGTCGCTCTTAGGTACAAAGGAAAGAGTGGCTTCATGGAGAGAGAACAATCTGATGTTGACATTGAAAGAGAAGAGGAATGTGGAGTTTGCTTGGAGGTGAAAGCTAAAGTTGTGTTGCCTGATTGCTGCCACTATATGTGTTTGAAGTGCTACAGAGATTGGTAA 522 0.4176 MGKCSFKDSLKALEADIQYANTLALDYPRDRDGGCFQMRISYSSAAPIFLFLLQWTDYRLAGALGLLRVLIYVSYGNGKNTMSVYERKASIRQFYSVIFPALLQLEKGITDLEERKQKEVALRYKGKSGFMEREQSDVDIEREEECGVCLEVKAKVVLPDCCHYMCLKCYRDW* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00942 173 SUPERFAMILY RING/U-box 133 173 - -
Phac6g00942 173 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
Phac6g00942 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 173 IPR013083 -
Phac6g00942 173 PANTHER RING FINGER PROTEIN 41, 151 4 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00942 Phac-Chr6 13495924 13499542 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00942 96 173 C2H2 Transcription Factor Family AT5G39550 26.250 4.67e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00942 - K25840 gmx:100808567 308.145