Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00940 ATGGGAAAGTGCTCCTTCAAGGACTCTCTTAAAGCTCTGGAAGCTGATATTCAGTATGCTAATACCCTGGCATTGGACTACCCAAGGGACAGAGACGGAGGATGCTTTCAGATGAGGATATCTTACAGTTCAGCAGCCCCTATTTTTCTATTTCTTCTTCAATGGACTGATTACCGCTTGGCTGGTGCTCTGGGTTTGCTGAGAGTTCTAATTTATGTGAGTTATGGAAATGGGAAGAATACTATGTCAGTATATGAAAGGAAAGCAAGCATTAGACAATTTTACTCTGTTATATTTCCTGCTCTGTTGCAACTTGAGAAAGGCATCACGGATTTGGAGGAAAGGAAACAGAAAGAAGTCGCTCTTAGGTACAAAGGAAAGAGTGGCTTCATGGAGAGAGAACAATCTGATGTTGACATTGAAAGAGAAGAGGAATGTGGAGTTTGCTTGGAGGTGAAAGCTAAAGTTGTGTTGCCTGATTGCTGCCACTATATGTGTTTGAAGTGCTACAGAGATTGGTGTCAGAGGTCTCAGTCTTGTCCCTTTTGCCGGGATAGCCTGAAGAGAATAAACTCTGGGGACCTTTGGATTTACACAGACATGAATGATATTGTTGATATTGGGACAATTTCCAGAGAGAATTGCAAGAGGCTGTTTCTTTACATAGAGAAGTTGCCTTTAATTGTTCCAGATCCCAGATCTGTGTTCTATGACCCATTTCTGAGATAA 729 0.417 MGKCSFKDSLKALEADIQYANTLALDYPRDRDGGCFQMRISYSSAAPIFLFLLQWTDYRLAGALGLLRVLIYVSYGNGKNTMSVYERKASIRQFYSVIFPALLQLEKGITDLEERKQKEVALRYKGKSGFMEREQSDVDIEREEECGVCLEVKAKVVLPDCCHYMCLKCYRDWCQRSQSCPFCRDSLKRINSGDLWIYTDMNDIVDIGTISRENCKRLFLYIEKLPLIVPDPRSVFYDPFLR* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00940 242 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
Phac6g00940 242 SMART ring_2 146 183 IPR001841 -
Phac6g00940 242 FunFam RING/U-box superfamily protein 128 193 - -
Phac6g00940 242 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
Phac6g00940 242 SUPERFAMILY RING/U-box 134 189 - -
Phac6g00940 242 PANTHER RING FINGER PROTEIN 41, 151 4 237 - -
Phac6g00940 242 Pfam Zinc finger, C3HC4 type (RING finger) 143 189 - -
Phac6g00940 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 193 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00940 Phac-Chr6 13495924 13499542 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00940 96 189 C2H2 Transcription Factor Family AT5G39550 26.531 1.74e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00940 - K25840 gmx:100808567 436.032