Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00939 ATGAGGATATCTTACAGTTCAGCAGCCCCTATTTTTCTATTTCTTCTTCAATGGACTGATTACCGCTTGGCTGGTGCTCTGGGTTTGCTGAGAGTTCTAATTTATGTGAGTTATGGAAATGGGAAGAATACTATGTCAGTATATGAAAGGAAAGCAAGCATTAGACAATTTTACTCTGTTATATTTCCTGCTCTGTTGCAACTTGAGAAAGGCATCACGGATTTGGAGGAAAGGAAACAGAAAGAAGTCGCTCTTAGGTACAAAGGAAAGAGTGGCTTCATGGAGAGAGAACAATCTGATGTTGACATTGAAAGAGAAGAGGAATGTGGAGTTTGCTTGGAGGTGAAAGCTAAAGTTGTGTTGCCTGATTGCTGCCACTATATGTGTTTGAAGTGCTACAGAGATTGGTGTCAGAGGTCTCAGTCTTGTCCCTTTTGCCGGGATAGCCTGAAGAGAATAAACTCTGGGGACCTTTGGATTTACACAGACATGAATGATATTGTTGATATTGGGACAATTTCCAGAGAGAATTGCAAGAGGCTGTTTCTTTACATAGAGAAGTTGCCTTTAATTGTTCCAGATCCCAGATCTGTGTTCTATGACCCATTTCTGAGATAA 618 0.4061 MRISYSSAAPIFLFLLQWTDYRLAGALGLLRVLIYVSYGNGKNTMSVYERKASIRQFYSVIFPALLQLEKGITDLEERKQKEVALRYKGKSGFMEREQSDVDIEREEECGVCLEVKAKVVLPDCCHYMCLKCYRDWCQRSQSCPFCRDSLKRINSGDLWIYTDMNDIVDIGTISRENCKRLFLYIEKLPLIVPDPRSVFYDPFLR* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00939 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 156 IPR013083 -
Phac6g00939 205 SMART ring_2 109 146 IPR001841 -
Phac6g00939 205 ProSitePatterns Zinc finger RING-type signature. 124 133 IPR017907 -
Phac6g00939 205 Pfam Zinc finger, C3HC4 type (RING finger) 106 152 - -
Phac6g00939 205 PANTHER RING FINGER PROTEIN 41, 151 1 200 - -
Phac6g00939 205 FunFam RING/U-box superfamily protein 91 156 - -
Phac6g00939 205 ProSiteProfiles Zinc finger RING-type profile. 109 147 IPR001841 -
Phac6g00939 205 SUPERFAMILY RING/U-box 97 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00939 Phac-Chr6 13495924 13499542 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00939 59 152 C2H2 Transcription Factor Family AT5G39550 26.531 7.68e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00939 K25840 - gmx:100808567 370.548