Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00920 ATGATGAGTAATGGTAATTGCTCCAAGAACATGAGGAATGGGAGTTGCTCCAAGAATCTGAGGAATGGTAATTGCTCCAAGAACCGTCTTTGTTATATATGTTTTGATTACAAGCCAGACAAACATTTCTTGGATGGCATTTGTAAGTTTAGAAATCACGCATTTTGCAGTTCCTGCATATCCAAGTATGTGGAAAGTGAAATAAAAAAAACAGTTCTAGATGTTTATTGTCCAGACCCTGAATGTTTTGTGGTATTGAAACCTCAATTTCTGCGTACCATTTTGCCCAGTGAAGTTGTTGATAAATGGGAATCTCGGAGATGTGAGTATTCGATTGTTGGGTCGCAGAAGACTTACTGCCCCTTCAAGGATTGTTCAGGTCTGTTGGTGAATGAATCAGAAAAGGTTGTGACCAGTGCTGAGTGTCCCTATTGTCATAGGCTATTTTGTGCACAGTGTAGGGTTCCTTGGCATGGAAATATGAGTTGTGGGGAATTTCAAAGGAAAAATAAAGATCCGGATGCCAAGTTTTTCAAGTTGGCCAAAGAGAAAAATTGGCAGAAATGTGTTGAGTGCAGCATGTATGTTCAGAAACTTGAAGGATGTGAACACATGACTTGCAGGTGTGGATACCAGTTCTGCTACATTTGTGGAAAGACATGGGACTATGGTCATGAATGCAAGAATCGTTCTGTTCTGGAGCGGATACAATCCGCATATTATTCATATACTAGGTGA 738 0.4011 MMSNGNCSKNMRNGSCSKNLRNGNCSKNRLCYICFDYKPDKHFLDGICKFRNHAFCSSCISKYVESEIKKTVLDVYCPDPECFVVLKPQFLRTILPSEVVDKWESRRCEYSIVGSQKTYCPFKDCSGLLVNESEKVVTSAECPYCHRLFCAQCRVPWHGNMSCGEFQRKNKDPDAKFFKLAKEKNWQKCVECSMYVQKLEGCEHMTCRCGYQFCYICGKTWDYGHECKNRSVLERIQSAYYSYTR* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00920 245 SUPERFAMILY RING/U-box 113 168 - -
Phac6g00920 245 CDD BRcat_RBR_unk 114 166 - -
Phac6g00920 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 115 IPR013083 -
Phac6g00920 245 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 21 227 IPR031127 GO:0004842|GO:0016567
Phac6g00920 245 SUPERFAMILY RING/U-box 175 228 - -
Phac6g00920 245 SMART ibrneu5 174 227 IPR002867 GO:0008270
Phac6g00920 245 SMART ibrneu5 101 163 IPR002867 GO:0008270
Phac6g00920 245 SUPERFAMILY RING/U-box 28 110 - -
Phac6g00920 245 ProSiteProfiles TRIAD supradomain profile. 27 245 IPR044066 -
Phac6g00920 245 Gene3D - 161 242 - -
Phac6g00920 245 CDD Rcat_RBR_unk 185 221 - -
Phac6g00920 245 Pfam IBR domain, a half RING-finger domain 114 163 IPR002867 GO:0008270
Phac6g00920 245 Pfam IBR domain, a half RING-finger domain 180 227 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00920 Phac-Chr6 13401999 13403361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00920 31 218 C3H Transcription Factor Family AT2G19610 31.683 9.01e-20 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00920 K11975 - lang:109340029 244.202