Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00889 ATGATGCCAAATAAGAAGAACCCCCTGGTGTTTATGGATGTGTCCATTGATGGGGATCCTGTTAAAAGGATGGTTTTTGAGCTTTTTTGTGATGTTGCTCCCATGACTGCAGAAAACTTTCGTGCATTATGTACAGGAGAAAAAGGTATCAGTCTAAATACTGGAAAACCACTGCACTACAAGGGTTCTTTCTTCCATCAGGTTATAAAAGGTTCCATTGTGCAGGGAGGAGATTTTGTCAATCGAAATGGGACTGGTGGAGAAAGCATATATGGTTCGAAGTTCCCGGATGAGTCACCTATGTTGAAGCATGATGCTTCAGGCCTTCTATCGATGGCAATTGCAAACCGTGACACTCTTGGTTCTCATTTTATTATCACCTTGAAAGCTGATCATCATCTTGATGGGTTTGTGTGTCTGGTTAATTTTTGCCACATTTTACTTCTTAGATGTTCTATTTTGACTGCTGGGGCTGGAAAGGTAAAATGCTTGACAGACTGTACAGTTTTGGGCCATTTTTGCAGGAATCATGTAGTCTTTGGGTGGCTTGTACAAGGATATAATGTATTAACGAAAATTGGAGAAATGGGTGATGAAGAAGGACATCCAACTGTAATTATTAAAATCATTAAATGTGGCGAATATAGTAATGGTGAGTATTACTGCTCCTTTTGA 675 0.3956 MMPNKKNPLVFMDVSIDGDPVKRMVFELFCDVAPMTAENFRALCTGEKGISLNTGKPLHYKGSFFHQVIKGSIVQGGDFVNRNGTGGESIYGSKFPDESPMLKHDASGLLSMAIANRDTLGSHFIITLKADHHLDGFVCLVNFCHILLLRCSILTAGAGKVKCLTDCTVLGHFCRNHVVFGWLVQGYNVLTKIGEMGDEEGHPTVIIKIIKCGEYSNGEYYCSF* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00889 224 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 65 77 IPR002130 GO:0000413|GO:0003755
Phac6g00889 224 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Phac6g00889 224 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 108 123 IPR002130 GO:0000413|GO:0003755
Phac6g00889 224 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 123 135 IPR002130 GO:0000413|GO:0003755
Phac6g00889 224 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 11 214 IPR002130 GO:0000413|GO:0003755
Phac6g00889 224 SUPERFAMILY Cyclophilin-like 3 217 IPR029000 -
Phac6g00889 224 PIRSF Peptidylpro_ismrse 163 220 IPR024936 GO:0003755
Phac6g00889 224 PIRSF Peptidylpro_ismrse 1 146 IPR024936 GO:0003755
Phac6g00889 224 Gene3D - 1 215 IPR029000 -
Phac6g00889 224 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 10 214 - -
Phac6g00889 224 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 12 213 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00889 Phac-Chr6 13156792 13161568 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00889 3 135 U-box Gene Family AT5G67530 38.060 2.97e-15 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00889 K09566 - gmx:100800303 298.516