LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac6g00888	ATGATGCCAAATAAGAAGAACCCCCTGGTGTTTATGGATGTGTCCATTGATGGGGATCCTGTTAAAAGGATGGTTTTTGAGCTTTTTTGTGATGTTGCTCCCATGACTGCAGAAAACTTTCGTGCATTATGTACAGGAGAAAAAGGTATCAGTCTAAATACTGGAAAACCACTGCACTACAAGGGTTCTTTCTTCCATCAGGTTATAAAAGGTTCCATTGTGCAGGGAGGAGATTTTGTCAATCGAAATGGGACTGGTGGAGAAAGCATATATGGTTCGAAGTTCCCGGATGAGTCACCTATGTTGAAGCATGATGCTTCAGGCCTTCTATCGATGGCAATTGCAAACCGTGACACTCTTGGTTCTCATTTTATTATCACCTTGAAAGCTGATCATCATCTTGATGGGAATCATGTAGTCTTTGGGTGGCTTGTACAAGGATATAATGTATTAACGAAAATTGGAGAAATGGGTGATGAAGAAGGACATCCAACTGTAATTATTAAAATCATTAAATGTGGCGAATATAGTAATGATGGAAAGAAGGTAAATAAATAA	558	0.3889	MMPNKKNPLVFMDVSIDGDPVKRMVFELFCDVAPMTAENFRALCTGEKGISLNTGKPLHYKGSFFHQVIKGSIVQGGDFVNRNGTGGESIYGSKFPDESPMLKHDASGLLSMAIANRDTLGSHFIITLKADHHLDGNHVVFGWLVQGYNVLTKIGEMGDEEGHPTVIIKIIKCGEYSNDGKKVNK*	186

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac6g00888	185	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	108	123	IPR002130	GO:0000413\|GO:0003755
	Phac6g00888	185	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	28	43	IPR002130	GO:0000413\|GO:0003755
	Phac6g00888	185	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	123	135	IPR002130	GO:0000413\|GO:0003755
	Phac6g00888	185	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	136	151	IPR002130	GO:0000413\|GO:0003755
	Phac6g00888	185	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	65	77	IPR002130	GO:0000413\|GO:0003755
	Phac6g00888	185	ProSiteProfiles	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	11	175	IPR002130	GO:0000413\|GO:0003755
	Phac6g00888	185	PIRSF	Peptidylpro_ismrse	1	181	IPR024936	GO:0003755
	Phac6g00888	185	FunFam	Peptidyl-prolyl cis-trans isomerase CYP95	2	183	-	-
	Phac6g00888	185	SUPERFAMILY	Cyclophilin-like	3	178	IPR029000	-
	Phac6g00888	185	Gene3D	-	1	183	IPR029000	-
	Phac6g00888	185	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	12	174	IPR002130	GO:0000413\|GO:0003755
	Phac6g00888	185	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	10	175	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac6g00888	Phac-Chr6	13156792	13161568	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac6g00888	3	178	U-box Gene Family	AT5G67530	37.079	2.53e-22	91.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac6g00888	K09566		-	gmx:100800303	329.331