Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00887 ATGATGCCAAATAAGAAGAACCCCCTGGTGTTTATGGATGTGTCCATTGATGGGGATCCTGTTAAAAGGATGGTTTTTGAGCTTTTTTGTGATGTTGCTCCCATGACTGCAGAAAACTTTCGTGCATTATGTACAGGAGAAAAAGGTATCAGTCTAAATACTGGAAAACCACTGCACTACAAGGGTTCTTTCTTCCATCAGGGAGGAGATTTTGTCAATCGAAATGGGACTGGTGGAGAAAGCATATATGGTTCGAAGTTCCCGGATGAGTCACCTATGTTGAAGCATGATGCTTCAGGCCTTCTATCGATGGCAATTGCAAACCGTGACACTCTTGGTTCTCATTTTATTATCACCTTGAAAGCTGATCATCATCTTGATGGGAATCATGTAGTCTTTGGGTGGCTTGTACAAGGATATAATGTATTAACGAAAATTGGAGAAATGGGTGATGAAGAAGGACATCCAACTGTAATTATTAAAATCATTAAATGTGGCGAATATAGTAATGATGGAAAGAAGGTAAATAAATAA 534 0.3895 MMPNKKNPLVFMDVSIDGDPVKRMVFELFCDVAPMTAENFRALCTGEKGISLNTGKPLHYKGSFFHQGGDFVNRNGTGGESIYGSKFPDESPMLKHDASGLLSMAIANRDTLGSHFIITLKADHHLDGNHVVFGWLVQGYNVLTKIGEMGDEEGHPTVIIKIIKCGEYSNDGKKVNK* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00887 177 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 11 167 IPR002130 GO:0000413|GO:0003755
Phac6g00887 177 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 128 143 IPR002130 GO:0000413|GO:0003755
Phac6g00887 177 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Phac6g00887 177 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 100 115 IPR002130 GO:0000413|GO:0003755
Phac6g00887 177 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 115 127 IPR002130 GO:0000413|GO:0003755
Phac6g00887 177 SUPERFAMILY Cyclophilin-like 3 170 IPR029000 -
Phac6g00887 177 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 12 166 IPR002130 GO:0000413|GO:0003755
Phac6g00887 177 Gene3D - 1 175 IPR029000 -
Phac6g00887 177 PIRSF Peptidylpro_ismrse 1 173 IPR024936 GO:0003755
Phac6g00887 177 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 10 167 - -
Phac6g00887 177 FunFam Peptidyl-prolyl cis-trans isomerase CYP19-2 2 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00887 Phac-Chr6 13156792 13161568 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00887 3 170 U-box Gene Family AT5G67530 36.517 9.85e-19 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00887 K09566 - gmx:100800303 308.531