Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00843 ATGCACTTTGAGGACTCAAGACTTAAAAGACCAAGACCCGAAGACTTTGAGAGTAACTGTGTGTGTGAGACAGAGAGAGATAGAGAGAGAGAGGAATCAAGACAGCTCCTTTTGAATTTTCTATCAGAATCTGAGGACCCAAAATCTAGGGGATCTGTAATCATGCAGTCCAAGTCTGAAACTGCAAATCGACTGAGGTCAGATCCTCATTCCTTTCAACCTGGAAGTGTTTATTCCGAGCCTTGGTGGCGTGGTATTGGTTATAATCCCTTGGCCCAAACAATGGCTGGGGCAAATGCATCCAATTCGTCATCTCTTGAATGCCCTAATGGTGATTCTGAATCCAACGAAGAAGGCCATTCTTTGTCCAATAGCGGGATGAATGAGGAAGATGATGATGCCACTAAAGATTCGCAGCCTGCTGCTCCTAACGAACCAGGAAATTATGGGCAAGAACAGCAAGGGATCCAGCATACTGCATCATCTGCTCCATCCATGCGTGAAGAATGCCTTACTCAGACACCGCAGCTGGAACTTGTTGGTCATTCAATTGCATGTGCTACAAATCCTTATCAAGATCCGTATTATGGGAGCATGATGGCAGTTTATGGTCACCAGCAGTTGGGATATCCTCCTTTTATAGGAATGCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAGCCTGTATATGTGAATGCCAAACAGTACCAAGGAATTCTGAGGCGAAGACAAGCCCGTGCTAAAGCAGAACTTGAAAGGAAGCTAATAAAATCTAGAAAGCCATATCTTCACGAGTCTCGGCACCAGCATGCTCTGAGAAGGGCAAGGGGTACCGGAGGACGATTTGCAAAGAAATCTGATGCTGAGGGCTCAAACAACTCAGGCAAGGAAAAGGATAATGATGCAAGAGCAGCAAAAGTACAAAACCGGTTCGAAGCACCTGGTTACCAAAATGGCAGTGGCGCTTACCATAATCATCACGGTTTGCAATCTTCAGTGTATCATTCATCCTCAGGTGAAAGAGTGGAGGAAGGGGACTGTTCAGGTCAGCAACTAAACCACAATTGA 1077 0.4578 MHFEDSRLKRPRPEDFESNCVCETERDREREESRQLLLNFLSESEDPKSRGSVIMQSKSETANRLRSDPHSFQPGSVYSEPWWRGIGYNPLAQTMAGANASNSSSLECPNGDSESNEEGHSLSNSGMNEEDDDATKDSQPAAPNEPGNYGQEQQGIQHTASSAPSMREECLTQTPQLELVGHSIACATNPYQDPYYGSMMAVYGHQQLGYPPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHALRRARGTGGRFAKKSDAEGSNNSGKEKDNDARAAKVQNRFEAPGYQNGSGAYHNHHGLQSSVYHSSSGERVEEGDCSGQQLNHN* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00843 358 MobiDBLite consensus disorder prediction 1 79 - -
Phac6g00843 358 MobiDBLite consensus disorder prediction 293 309 - -
Phac6g00843 358 Gene3D - 228 290 - -
Phac6g00843 358 ProSiteProfiles NF-YA/HAP2 family profile. 228 288 IPR001289 GO:0003700|GO:0006355
Phac6g00843 358 MobiDBLite consensus disorder prediction 326 341 - -
Phac6g00843 358 ProSitePatterns NF-YA/HAP2 subunit signature. 233 253 IPR018362 GO:0003677|GO:0016602
Phac6g00843 358 SMART cbf3 227 288 IPR001289 GO:0003700|GO:0006355
Phac6g00843 358 MobiDBLite consensus disorder prediction 98 170 - -
Phac6g00843 358 MobiDBLite consensus disorder prediction 265 358 - -
Phac6g00843 358 MobiDBLite consensus disorder prediction 124 138 - -
Phac6g00843 358 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 230 285 IPR001289 GO:0003700|GO:0006355
Phac6g00843 358 MobiDBLite consensus disorder prediction 37 74 - -
Phac6g00843 358 MobiDBLite consensus disorder prediction 1 36 - -
Phac6g00843 358 MobiDBLite consensus disorder prediction 265 282 - -
Phac6g00843 358 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 66 335 IPR001289 GO:0003700|GO:0006355
Phac6g00843 358 MobiDBLite consensus disorder prediction 141 170 - -
Phac6g00843 358 MobiDBLite consensus disorder prediction 98 123 - -
Phac6g00843 358 PRINTS CCAAT-binding transcription factor subunit B signature 231 253 IPR001289 GO:0003700|GO:0006355
Phac6g00843 358 PRINTS CCAAT-binding transcription factor subunit B signature 262 285 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00843 Phac-Chr6 12796151 12800571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00843 70 298 CCAAT-HAP2 Transcription Factor Family AT5G12840 55.652 7.02e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Phac6g00843 CBFB_NFYA 5.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00843 K08064 - gmx:100808378 575.859