Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00712 ATGAACCTTGCTGATTGGGATCAAGAACTGAAAAAGTATCAGGATGTGATAGCTTCAGGTACAAAGAATATGAAAATAAAGGCCATAATGATGCTGGCTCGTTTTTCTAAGCATGCCCCTGAGCATGTTTTAGCTCGCACCATACCCATTCTCACTGAGATTCTTGGTCAAAATGTTTTAAATGACTCTGCTCCTTCACTTCAAGAGGCTGCTGCTTATTGCTTGAAGTGCATTGCTTGCAGGGGTGATGGTGCGTTGGCTGTTGAAATTGGTGGACATGGTGCTCCTCATTCTTTGATGAGGTTGCTGCCTCACTCTGATGGAAGGATGCAGAAGGTCCTGATAAAATGTTTGCTGGTTATTGTTAGTTTTTGCAATGCAAGTAGGACAGTTGTTGCCACCAATGGTGGGGTGGAAGTGATAATTGGTTTGTTGAGTTCTTGCACCAATGATACTAGGAGGTATTTGTTGGAGATTTTGAGTGTGTTAGCATTGAGGAGGGATGTTAGGAAGGCTCTCACTAGACTAAGAGCTCTTCACTACGTTGTGGAGGCTGCTAGTTTTGGGAGCATAGTGTCTAGGGAAAGGGCTTGTCAAGCAATTGGTTTGCTTGGAGTCACCAGACAGACTCGGCGTATGCTTGTTGAATTGGGAGCAATTCCAGTGCTTGTGTCGTTGTTTCGTGATGGAGAACACTCCACAAAGCTTGTTGCTGGTAATTCTCTTGGTGTGATATCTGCTCATGTGGATTACATTAGGCCAGTTGCTCAAGCTGGGGCTATCCCCCTTTATGCTGAGCTTCTTGAAGGACCTGATCCTTCTGGGAAAGAGATAGCTGAGGATGTTTTCTGTATATTGGCTGTTGCTGAGGCAAATGCTGTTGAAATTGCTGGTCATTTGGTGAGGATTCTTAGAGAAGGTAATGATGAGGCAAAGGCTTCTGCGGCCGATGTGATGTGGGATCTGTCGGGTTACAAGCATTCAATGTCTGTAGTCAGGGATTCAGGTGCAATTCCTATTCTTGTTGAGCTTTTGGAGAGTGGGAGTGAAGATGTGAAGGTGAATGTTTCTGGGGCATTTGCTCAACTGAGCTATGATGGAACTGATAGAATGTCACTTGCTGAGGCAGGGGCGATTCCAATTCTCATTGACTTGATGAATGATGTTGATGAGGTTGAGGAATTAAGGGATAATGCTACAGAGACTCTTGTCAATTTTTATGAAGATCCATTGTATCATGATAGAGTGTCCGATGCAATTAATGTTTCTTCATTCAGAAATATGCAGAATAGGTTAGTTCATATTCGTGCATCCAATGAGCACATGGCTAGATCTTTGAGAAGAATGAGCGTTGAGCAGCTCACATGGAACCCAGATGTTGTATAA 1386 0.4365 MNLADWDQELKKYQDVIASGTKNMKIKAIMMLARFSKHAPEHVLARTIPILTEILGQNVLNDSAPSLQEAAAYCLKCIACRGDGALAVEIGGHGAPHSLMRLLPHSDGRMQKVLIKCLLVIVSFCNASRTVVATNGGVEVIIGLLSSCTNDTRRYLLEILSVLALRRDVRKALTRLRALHYVVEAASFGSIVSRERACQAIGLLGVTRQTRRMLVELGAIPVLVSLFRDGEHSTKLVAGNSLGVISAHVDYIRPVAQAGAIPLYAELLEGPDPSGKEIAEDVFCILAVAEANAVEIAGHLVRILREGNDEAKASAADVMWDLSGYKHSMSVVRDSGAIPILVELLESGSEDVKVNVSGAFAQLSYDGTDRMSLAEAGAIPILIDLMNDVDEVEELRDNATETLVNFYEDPLYHDRVSDAINVSSFRNMQNRLVHIRASNEHMARSLRRMSVEQLTWNPDVV* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00712 461 SMART arm_5 366 408 IPR000225 GO:0005515
Phac6g00712 461 SMART arm_5 325 365 IPR000225 GO:0005515
Phac6g00712 461 SMART arm_5 248 288 IPR000225 GO:0005515
Phac6g00712 461 SMART arm_5 207 247 IPR000225 GO:0005515
Phac6g00712 461 SMART arm_5 125 165 IPR000225 GO:0005515
Phac6g00712 461 SMART arm_5 35 80 IPR000225 GO:0005515
Phac6g00712 461 Gene3D - 10 297 IPR011989 -
Phac6g00712 461 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 336 378 IPR000225 GO:0005515
Phac6g00712 461 SUPERFAMILY ARM repeat 48 407 IPR016024 -
Phac6g00712 461 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 377 406 IPR000225 GO:0005515
Phac6g00712 461 Pfam Armadillo/beta-catenin-like repeat 331 364 IPR000225 GO:0005515
Phac6g00712 461 Gene3D - 298 445 IPR011989 -
Phac6g00712 461 Coils Coil 382 402 - -
Phac6g00712 461 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 300 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00712 Phac-Chr6 11834228 11836445 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00712 207 410 U-box Gene Family AT2G23140 28.910 1.19e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00712 - - gmx:100819735 816.994