Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00697 ATGGAATCGGATCTTGGCAAGCTCTTCATTGGGGGAATATCTTGGGACACTGATGAGGAACGGCTTAAGGAATATTTTGGGAAATATGGGGAGGTGATAGAGGCTGTGATCATGAGGGATCGCGTAACAGGTCGTGCTCGCGGCTTTGGTTTTGTTGTCTTTGCTGATCCTTCTGTTGCAGAAAGAGTAATCATGGATAAACACATAATTGATGGGCGCACAGTTGAAGCAAAGAAAGCTGTTCCTAGGGATGATCAGCTCAATATAAATAGGCAGCAGCAGTCTGGCAGTGCACACGCATCTCCTGGTCCTGGACGCACCAAAAAAATCTTTGTTGGAGGTTTACCATCAACAATCACTGAAAGTGATTTTAAGAAGTATTTTGATCAGTTTGGTACAATTACAGATGTTGTAGTTATGTATGATCATAATACCCAGAGGCCAAGAGGTTTTGGCTTCATTACCTATGATTCTGAAGAAGCTGTGGATAGAGTTCTATATAAAACTTTTCATGAACTCAATGGTAAGATGGTTGAAGTCAAGAGGGCAGTTCCCAAAGAGCTTTCCCCTGGTCCCAACCGAAGCCCGTTGATAGGATATAACTATGGTTTGAATAGGGCCAGTAGCTACCTAAACAGTTATGCTCAGGGTTATAGTATGAGTCCAATAGGAGGATATGGAGTGAGGATGGATGGTAGGTTTAGTCCTCTTACTGGTGGTAGAAGTGGATTTACTCCCTTTGGCAACACTGGTTATGGAATGGGAATGAATTTGGATTCAGGATTGAGCCCAACCTTTGGAGGGACTTCCAATTATGGGAGCAATCTAGGATATGGTCGACTATTGAATCCTTTCTACAATGGCAACTCTGGCAGATATACCACTCCTATAGGCTATAGTGGGGTCAATGGGAGAAGTGATTCTCTTATGAACTCACCTTCTCGGAATTTATGGGGAAATGGAGGCCTCAATAATGCCAGTAATCCTATCAGCCCCAGCCCTTTCCTAGGATCTGGAAGTGGAGCTTTTGGTGTTTCAATTGGAAATAGTGGCACAGGCTGGGGTCCATCCATTCCAGCCCAGGGTGGAGGTGCTGCTTCTGGTTATGGTACTGGGAATAATGTTTATGAAGGTGGTGATAGCAGCTTTGGTCTAGGTGGGGCAGGGTATGGAAGAAACAACAGTTCAGGTGTGACTCCAGCCTCTACATTTAATGTGTCAACTGGTGGTTATGAAGGATCGTACGGGGACTTGTACCGTACTGGCAGTGGTTCAGTTTACAACGACTCTGCTTGGCGTTCTGCTGTCTCTGAGATTGATGGTTCTGGTTCATTTGGTTATGGTCTTGGTGGTATAGCTTCAGATGACCCAGTAAAGAATTCTGAAGGTTATATTGGAAACTACAATGTTACTAGTAGACAACCTAATAGAGGAATCGCTGCCTAG 1446 0.4433 MESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRVTGRARGFGFVVFADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQLNINRQQQSGSAHASPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPNRSPLIGYNYGLNRASSYLNSYAQGYSMSPIGGYGVRMDGRFSPLTGGRSGFTPFGNTGYGMGMNLDSGLSPTFGGTSNYGSNLGYGRLLNPFYNGNSGRYTTPIGYSGVNGRSDSLMNSPSRNLWGNGGLNNASNPISPSPFLGSGSGAFGVSIGNSGTGWGPSIPAQGGGAASGYGTGNNVYEGGDSSFGLGGAGYGRNNSSGVTPASTFNVSTGGYEGSYGDLYRTGSGSVYNDSAWRSAVSEIDGSGSFGYGLGGIASDDPVKNSEGYIGNYNVTSRQPNRGIAA* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00697 481 CDD RRM2_Hrp1p 109 186 - -
Phac6g00697 481 Gene3D - 86 196 IPR012677 -
Phac6g00697 481 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Phac6g00697 481 SMART rrm1_1 109 181 IPR000504 GO:0003723
Phac6g00697 481 SMART rrm1_1 7 78 IPR000504 GO:0003723
Phac6g00697 481 SUPERFAMILY RNA-binding domain, RBD 4 105 IPR035979 GO:0003676
Phac6g00697 481 MobiDBLite consensus disorder prediction 86 107 - -
Phac6g00697 481 Gene3D - 6 85 IPR012677 -
Phac6g00697 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 185 IPR000504 GO:0003723
Phac6g00697 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Phac6g00697 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 168 IPR000504 GO:0003723
Phac6g00697 481 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Phac6g00697 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Phac6g00697 481 SUPERFAMILY RNA-binding domain, RBD 107 195 IPR035979 GO:0003676
Phac6g00697 481 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 477 - -
Phac6g00697 481 MobiDBLite consensus disorder prediction 86 101 - -
Phac6g00697 481 FunFam Heterogeneous nuclear ribonucleoprotein 1 105 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00697 Phac-Chr6 11702154 11706605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00697 5 182 Eukaryotic Initiation Factors Gene Family AT2G23350 23.333 2.97e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00697 K14411 - gmx:100794390 906.36