Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00635 ATGGGAAGCGAAGAAGAGAGGGTTCTTGAGAACCAACTCGAACTTCAATTGCAAGAGCAAAGGGATTCTCTCTCTGCTATCGATCAAGCTCTCCTCTCTGATCCAACAAACCTTGAGCTTCTCGCGGTTCACGAGGAGCTTGTCCAGGCAATTAAGGATGCAGAAGAGGGACTTTTTCACCTAAAACGTGCACGATTGTTACAGGAAGCGGATGCAATTCTGCATAACACTAATATTTTTGCCGAAGACGAGAAAGTGGAACTCCTTGATCCCACAGATGTTGAACCAGAGCTGTTGGAGGAAAAATGTCATTCTGTTGGATCTAAATGTAGATTTCGGCACATAAATGGGCGCTGGTACAATGGTCAAGTGGTGCAGTTGGATAATTCAGTGGCCAAAGTTTCATTCCTTACTCCTACGTCTGAGAATATGCTGATGTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTAGTAGCTGTCGCCTATCACATGGAGTTGATGTTCACTTGTCTGCTCTTAAGAAATTTGTCCCTACAATCTGGAAGCAGTCCCTTGTCGGGTCAAGTATATGGGCAGTCTCAACTGCAAATGCAGGCACTTGGAGAGAAGCCGAGCTCGAGTCCTGGGATGAAAAGGCTGAAGTTGGACAAGTTGTTTTCCGAGATGACGGTAGTACTGTGAAACTTGGCGCAGAAGATATGGCACTGTCTGAGCATGCAGAAATGAGTGACTCAGAGAGTGATTCCAGCTTACAGCAATCTGAGTCCAGTGACTATGAGGAGGATGAGGAATCACAAGGTTTAGGATTTCTGGAGAGTACTAACCTACAGAGAGGAGTTCAAACTGAAACTGCAAAATTTGCCACTTGGGAAAACCACACTAGAGGCATAGCTTCCAGAATGATGGCTAATATGGGGTACAGAGAAGGAATGGGTTTAGGTGTAACGGGTCAGGGAATGCTGGACCCCATACCAGTGAAGATCTTACCACCAAAGCAATCCTTGGATTATGCAATTGAGTCTCATAAAAGGGAAGAGAAAGAAGACAAGGAATGCAAGAAGAAGCGGAGCCGAGGTGGGAAGAGAAAACGTGACAAGAAATTTGCAGAAGCAAATCGTGCAGCAAAAGAGGAAGAGGAGTCGGCATCAGATGTCTTTGCATTGATAAACAATCAGCTGACAATGCACAGTGAGGCTTTTGGCGGTGGATCAATGAAGAAGCAGCAAAGTAAAGGTCCCGAGGAAGGTAAAAAGGTGGATAGACGGGCACTGGTTGCTTATGAGGAAGAGGTGAAGGATTTGAAGATGAGGGTTGAAAAGCTTGAGCAACTTGTGAACGCCAATAAGAAAGAGAAGGCTGTGTATGAGGCTGCCATGAGAAAATTAAATACAACCCGCAAAGCCTTGGCAGATGCCGAAGCAGTTCATGCCTCTGCCTCAAATACAGTTGTTAGCAAAGAAAAAGAAAAGAGATGGCTCAAGTTTTAG 1491 0.45 MGSEEERVLENQLELQLQEQRDSLSAIDQALLSDPTNLELLAVHEELVQAIKDAEEGLFHLKRARLLQEADAILHNTNIFAEDEKVELLDPTDVEPELLEEKCHSVGSKCRFRHINGRWYNGQVVQLDNSVAKVSFLTPTSENMLMCKFFLQQRCRFGSSCRLSHGVDVHLSALKKFVPTIWKQSLVGSSIWAVSTANAGTWREAELESWDEKAEVGQVVFRDDGSTVKLGAEDMALSEHAEMSDSESDSSLQQSESSDYEEDEESQGLGFLESTNLQRGVQTETAKFATWENHTRGIASRMMANMGYREGMGLGVTGQGMLDPIPVKILPPKQSLDYAIESHKREEKEDKECKKKRSRGGKRKRDKKFAEANRAAKEEEESASDVFALINNQLTMHSEAFGGGSMKKQQSKGPEEGKKVDRRALVAYEEEVKDLKMRVEKLEQLVNANKKEKAVYEAAMRKLNTTRKALADAEAVHASASNTVVSKEKEKRWLKF* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00635 496 Coils Coil 425 476 - -
Phac6g00635 496 Gene3D - 118 178 - -
Phac6g00635 496 MobiDBLite consensus disorder prediction 341 356 - -
Phac6g00635 496 MobiDBLite consensus disorder prediction 365 382 - -
Phac6g00635 496 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Phac6g00635 496 Pfam CCCH-type zinc finger 146 166 IPR041367 -
Phac6g00635 496 MobiDBLite consensus disorder prediction 341 382 - -
Phac6g00635 496 SMART G-patch_5 293 339 IPR000467 GO:0003676
Phac6g00635 496 Pfam G-patch domain 295 338 IPR000467 GO:0003676
Phac6g00635 496 MobiDBLite consensus disorder prediction 239 270 - -
Phac6g00635 496 SMART c3hfinal6 141 167 IPR000571 GO:0046872
Phac6g00635 496 ProSiteProfiles G-patch domain profile. 295 341 IPR000467 GO:0003676
Phac6g00635 496 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 496 - -
Phac6g00635 496 MobiDBLite consensus disorder prediction 400 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00635 Phac-Chr6 11245265 11251903 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phac6g00635 G-patch 5.8e-12 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00635 - - gmx:100796284 786.178