Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00623 ATGGAAGAAGCTACCTGCAATGATGACTCTAATATTGCACCAGTTACACATTCTTCTCTGGTGTTTGATGGGAAAAGACTTGTCCTGGATGAGATGGATTTCTTTGCTCAGAAGAAGAAGAAGAAGAAAAATGTGGTTGGTGATGATGAAATGGTGCACCAAATGGAGCTTCATGTGGATACTAGTTTAGATCTCCTCACAAAGAGTTCCCCTACCATGGGAGAAGGATCATCGGAAGCAAAGGGTAATAAAAGAGATGATGAGTTTGCAGCTATGGTAGCTGAATTGCACCACATGAATGCTGAAAATCAACGCTTGAGAGATCAGGTTGATCAGGTGAATGATAAGTATCATGCTCTACACAATCAAATTATGAAAATGATGGAGAAACGACAACAAAAGAATGAGGGTAAGAAAGCTGATATGATTCCAAGGCCATTCTTGGATATTGGAGTTGCTATGAAGGAAGAGAGTTCGCAGCAACATCCCAAGAGAAAACTGCAAGAAAGCAAGAATCAGAAGATTTGCACTACTGAGTTGGAGGCATCTGAAAAAGTTATTCCAAGGTTGCTCTCAAACAGTTCTTTCAAGGATGTTGATGAAGCATCAGAAACCATGTCAATGATCAAGAAAGCTCGAGTATCAGTTCGAGCAAGATCTGTTTCTTCTATGATTTCTGATGGATGTCAATGGAGAAAGTATGGGCAGAAGATGGCAAAAGGGAATCCATGTCCAAGAGCTTATTATCGTTGTTCAATGGGGACTGGTTGCCCAGTTCGGAAGCAAGTGCAAAGGAGTGCAGAGGATCAAAGTGTGTTGATCACAACATATGAAGGGCAGCATAATCATGTACTCCCTCCAGCTGCCAAAGCAATGGCATCCACCACATCTGCAGCTGCATCAATGCTTCTTTCAGGATCAATGCCAAGCTCAGATGGCCTTCTACACCCAAACATATTAGAAAGTGCAACACTTCCATTTTCACAGAACTTGGCAACCCTCTCAGCTTCAGCTCCATTTCCAACTATCACTTTGGATCTCACTCAAAGTGCCACCAATACTTCCTCACAGCAGCTACCACAAGAGGCACCTCAGGATTCTCAACTCAGCCTCATTTCTCCACTTTTGGCTCCAAATCTTTTTTACCACCAAACTAAGCTTTCTAGCTTACATGGCTCTCAGGGAACAGAACCTGCTTCTTTTGCTGACACAGTAAATGCAGCAACAGCTGCTATCACTACAGACCCCAAATTCAGTGCAGCTCTTATGGCAGCCATAACATCAATTATTGGAAGTTCACATCCAGTGGAGACTCAGCATTGCAATAACAAATAA 1335 0.4247 MEEATCNDDSNIAPVTHSSLVFDGKRLVLDEMDFFAQKKKKKKNVVGDDEMVHQMELHVDTSLDLLTKSSPTMGEGSSEAKGNKRDDEFAAMVAELHHMNAENQRLRDQVDQVNDKYHALHNQIMKMMEKRQQKNEGKKADMIPRPFLDIGVAMKEESSQQHPKRKLQESKNQKICTTELEASEKVIPRLLSNSSFKDVDEASETMSMIKKARVSVRARSVSSMISDGCQWRKYGQKMAKGNPCPRAYYRCSMGTGCPVRKQVQRSAEDQSVLITTYEGQHNHVLPPAAKAMASTTSAAASMLLSGSMPSSDGLLHPNILESATLPFSQNLATLSASAPFPTITLDLTQSATNTSSQQLPQEAPQDSQLSLISPLLAPNLFYHQTKLSSLHGSQGTEPASFADTVNAATAAITTDPKFSAALMAAITSIIGSSHPVETQHCNNK* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00623 444 Pfam WRKY DNA -binding domain 227 283 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phac6g00623 444 Coils Coil 96 130 - -
Phac6g00623 444 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 76 439 IPR044810 GO:0003700
Phac6g00623 444 Gene3D WRKY domain 210 287 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phac6g00623 444 ProSiteProfiles WRKY domain profile. 220 286 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phac6g00623 444 MobiDBLite consensus disorder prediction 65 85 - -
Phac6g00623 444 SUPERFAMILY WRKY DNA-binding domain 222 286 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phac6g00623 444 SMART WRKY_cls 225 285 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phac6g00623 444 FunFam probable WRKY transcription factor 31 210 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00623 Phac-Chr6 11156994 11164156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00623 88 430 WRKY Transcription Factor Family AT4G04450 44.051 3.67e-90 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phac6g00623 WRKY 2.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00623 - - pvu:PHAVU_006G047300g 793.112