Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00616 ATGAGTGAACAAGGGTTTCAATCTGAAAGCACCGATCCTGGGAGGACAAACATTTCTGAACCTGAACCTAATATGTTAAGAGTAATAATGGTGGAAGGAAATACAATGGATTCCCATTTCTTACTAGACGCTTATTATGACAATAGGATGGTGTATGGAATGACACAACTCAATAGAGTTCAGCATCAACCTAGTTTTGATATTGGTGTTTCACATCATATTAGTGTTAATGCAATTGGCATCCCCTTCTTTCATAGCTCTGGCTCTTGGGGATCTTTGATTCAAGCTCCAACACCTAGTGCTAATGTAAGTTCATTAGAGAATTCAAGAATGAATCTCCAAAGATATCATGATACAACTGGAAGTAGAAGGGGCCACAGATTTTCCCATCAGCACTACCATCATCATGCACAACCTATGCAAGTGCAAGAGATCAGAGGTCACTCCAACTTTCGTGCTCGTAGAGGCAACATGCATAGAGGTCACTCCAACTTTCATGCTCCTAGAGGCAACATGCATAATCATCCTCCTAGAGGTCACTCCAACTTTCATGCTCCTAGAGGCAACATGCATAATCTTCCTCCTAGGGCCTTTCTTCAGGAAGGTGCTTCATTCCGTGACCATCATAGTGATATACAATTGGACATTGACGACATGTCATATGAGGCAAGTTTGTCTAGTGACCTTCTTATATTAGGTGAACAGATTGGCAACGTAGAAAGGGGTTTGTCACAAGAAATTATTGCAAGACAAATGCTGACAAAAACTTATCTACTACCTAATAACTTGGAGGGGTCAACTTCTGAGGAACAGGAAATTGATCTTTGCATAATATGTCAGGATGAATATAAGAACAAAGAGGAGATTGGAATTCTTCAATGCGGACATGAATATCATGCAGATTGTGTAAGGAGATGGTTACAAGAGAAAAATGTTTGTCCCCTGTGCAAATCAAAAGCATTGACTATCGGATAG 975 0.4021 MSEQGFQSESTDPGRTNISEPEPNMLRVIMVEGNTMDSHFLLDAYYDNRMVYGMTQLNRVQHQPSFDIGVSHHISVNAIGIPFFHSSGSWGSLIQAPTPSANVSSLENSRMNLQRYHDTTGSRRGHRFSHQHYHHHAQPMQVQEIRGHSNFRARRGNMHRGHSNFHAPRGNMHNHPPRGHSNFHAPRGNMHNLPPRAFLQEGASFRDHHSDIQLDIDDMSYEASLSSDLLILGEQIGNVERGLSQEIIARQMLTKTYLLPNNLEGSTSEEQEIDLCIICQDEYKNKEEIGILQCGHEYHADCVRRWLQEKNVCPLCKSKALTIG* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00616 324 ProSiteProfiles Zinc finger RING-type profile. 276 317 IPR001841 -
Phac6g00616 324 CDD RING-H2_RNF24-like 274 320 - -
Phac6g00616 324 MobiDBLite consensus disorder prediction 1 18 - -
Phac6g00616 324 SUPERFAMILY RING/U-box 275 320 - -
Phac6g00616 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 92 321 IPR045191 GO:0061630
Phac6g00616 324 MobiDBLite consensus disorder prediction 1 23 - -
Phac6g00616 324 Pfam Ring finger domain 275 317 IPR001841 -
Phac6g00616 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 321 IPR013083 -
Phac6g00616 324 SMART ring_2 276 316 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00616 Phac-Chr6 11076312 11077679 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00616 207 321 C3H Transcription Factor Family AT2G15530 44.348 3.79e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00616 K19041 - pvu:PHAVU_006G035700g 540.036