Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00592 ATGAATCACCAAAGATATCATGTTACAACAGAAATTAGAAGGGGCCACAGATTAGCCCATCGACACAACCATCATCACGCACAGCCTGTGCAAGTGCAAGAGATCAGAGGTCACTCCAACTTTCATGCTCGTAGAGGCAACATGCATAGAGGTCACTCCAACTTTCATGCTCCTAGAGGCAACATACATGATCTTCTTTCTAGGGCCTTTCTTCAGGATCTTCTAAGTGAACGGATTGGCAACGTAAAGAGGGGTTCGTCAGAAGAAATTATTGCAAGACAAATGTTGACAAAAACTAATCTACTACCTAATAACTTGGAGGGGTCAACTTCTGAGGAACAGGAAATTGATCTTTGCATAATATGTCAGGATGAATATAAGAACAAAGAGGAGATTGAAATTCTTCAATGCGGACATGAATACCATGCAGATTGTCTAAGGAGATGGTTACAAGAGAAAAATGTATGTCCCCTGTGCAAATCAAAAGCATTAGCTATTGGATACAAGCATAAATAA 516 0.4012 MNHQRYHVTTEIRRGHRLAHRHNHHHAQPVQVQEIRGHSNFHARRGNMHRGHSNFHAPRGNIHDLLSRAFLQDLLSERIGNVKRGSSEEIIARQMLTKTNLLPNNLEGSTSEEQEIDLCIICQDEYKNKEEIEILQCGHEYHADCLRRWLQEKNVCPLCKSKALAIGYKHK* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00592 171 ProSiteProfiles Zinc finger RING-type profile. 119 160 IPR001841 -
Phac6g00592 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 165 IPR013083 -
Phac6g00592 171 Pfam Ring finger domain 118 160 IPR001841 -
Phac6g00592 171 SUPERFAMILY RING/U-box 118 163 - -
Phac6g00592 171 CDD RING-H2_RNF24-like 117 163 - -
Phac6g00592 171 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 5 164 IPR045191 GO:0061630
Phac6g00592 171 SMART ring_2 119 159 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00592 Phac-Chr6 10941184 10941794 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00592 75 164 C3H Transcription Factor Family AT2G15530 43.333 5.60e-20 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00592 K19041 - pvu:PHAVU_010G0831000 244.973