Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00591 ATGAATCACCAAAGATATCATGTTACAACCGAAAGTAGAAGGGGCCATAACCATCGGCACAACCATAATCATGCACAGCTTGTGCAAGTGCAAGAGATCAGAGGTCACTCCAACTTTCATGCTTGTAGAGGCAACATGCGTAGAGGTCATTCCAACTTCCATGCTCGTAGAGGCAACATGCATAGAGGTCCTTCTAGGGCCTTTCTTCGGGAAGTTGCTTCTTTCGATTACCATCATAGTTATATGCAAGTAGACATTGAGAACTTGCCATATGAGGCAAGTCTGTTATGTATCGTCTGGTGTATTATGTGGATTAGCTATGAGGATCTTCTTATTTTAGGTCCACGGATTGGCAACGTAAAGAGGGATTTGTCAGAAGAAATTATAGCAAGACAAATACTGACAAAAACTTATCTACTACCTAATAACTTGGAGGGGTCAACTTCTGAGGAACAGGAAATTGATCTTTGCATAATATGTCAGGATGAATATAAGAACAAAGAGGAGATTGGAATTCTTCAATGCGGACATGAATACCATGCAAATTGTATAAGCAGATGGTTACAAGAGAAAAATAGAATGAATCACCAAAGATATCATGTTACAACCGAAAGTAGAAGGGACCACAGCCATCGACACAACCATAATCATGCACAGCCTGTGCAAGTGCAAGAGATCAGAGGTCACTCCAACTTTCATGCTCGTAGAGGCAACATGCATAGAGGTCAACGGATTGGCAACGTAAAAAGGGATTTGTCAGAAGAAATTATTGCAAGACAAATGCTAACAAAAACTTATCTACTACCTAATAACTTGGAGGGGTCAACTTCTGAGGAACAGAAAATTGATCTTTGCATAATATGTCAGGATGAATATAAAAACAAAGAGGAGATTGGAATTCTTCAATGCGAACATGAATACCATGCAAATTGTATAAGGAGATGGTTACAAGAGAAAAATATTTGTCCCCTGTGCAAATCAAAAGCATTGGCTATTGGATAG 1002 0.3932 MNHQRYHVTTESRRGHNHRHNHNHAQLVQVQEIRGHSNFHACRGNMRRGHSNFHARRGNMHRGPSRAFLREVASFDYHHSYMQVDIENLPYEASLLCIVWCIMWISYEDLLILGPRIGNVKRDLSEEIIARQILTKTYLLPNNLEGSTSEEQEIDLCIICQDEYKNKEEIGILQCGHEYHANCISRWLQEKNRMNHQRYHVTTESRRDHSHRHNHNHAQPVQVQEIRGHSNFHARRGNMHRGQRIGNVKRDLSEEIIARQMLTKTYLLPNNLEGSTSEEQKIDLCIICQDEYKNKEEIGILQCEHEYHANCIRRWLQEKNICPLCKSKALAIG* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00591 333 Pfam Ring finger domain 284 326 IPR001841 -
Phac6g00591 333 Pfam Ring finger domain 156 192 IPR001841 -
Phac6g00591 333 CDD RING-H2_RNF24-like 283 329 - -
Phac6g00591 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 5 193 IPR045191 GO:0061630
Phac6g00591 333 ProSiteProfiles Zinc finger RING-type profile. 157 187 IPR001841 -
Phac6g00591 333 SUPERFAMILY RING/U-box 156 193 - -
Phac6g00591 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 201 IPR013083 -
Phac6g00591 333 SMART ring_2 157 213 IPR001841 -
Phac6g00591 333 SMART ring_2 285 325 IPR001841 -
Phac6g00591 333 ProSiteProfiles Zinc finger RING-type profile. 285 326 IPR001841 -
Phac6g00591 333 SUPERFAMILY RING/U-box 284 329 - -
Phac6g00591 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 330 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00591 Phac-Chr6 10918200 10927210 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00591 242 330 C3H Transcription Factor Family AT2G15530 42.857 1.02e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00591 K19041 - pvu:PHAVU_010G0831000 223.787