Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00579 ATGAACGAGATGAGTGAACAAGGGTTTCAATCTGAAAGCACCGATCCTGGGAGGACAAACATTTCTGAACCTGAACCTAATATGTTAAGAGTAATAGTGGTGGAAGGAAATACAATGGATTCCCATTTCTTACTGGACGCTTATTATGACAATAGGATGGTGTATGGAATGACACAACTCAATGGAGTTCAGCATCAACCTAGTTTTGACATTGGTGTTTCACATCATATTAGTGTTACAGATTCATCTAATGCAATTGGCATCCCCTTCTCTCATAGCTTTGGCTCTTGGGGATCTTTGATTCAAGATCCAACTCCCAGTGCTAATGTAAGTTCATTAGAGAATTCAAGAATGAATCTCCAAAGATATCATGATACAACTGGAAGTAGAAGGGGCCACAGATTTGCCCATCAGCACTACCATCATCATGCACACTACCATCATCATGCACACTACCATCATCATGCACAGCCTGTACAAGTGCAACAGATCAGAAGTCAATCCAACTTTCGTGCTCGTAGAGGCAACATGCATAGAGGTCACTCCAACTTTCATGTTCGTAGAGGCAACATGTATAATCATCCTCCTAGAGGTCACTCCAACTTTCATGCTCCTAGAGACAACATGCATAACCTTCCTCCTAGGGCCTTTCTTCAGGAAGTTGCTTCATTCCGTGACCATCATAATGATATACAATTGGACATTGACGACATGTCATATGAGGCAAGTCTCTTATGTATCGAGCTTCTTATATTAGGTGAAGAGATTGGCAATGTAGAGAGGGGTTTGTCAGAAGAAATTATTGCAAGACGAATGCTAACAAAAACTTATCTACTACCTAATAACTTGGAGGGGTCAAGTTCTGAGGAACAGGAAATTGATCTGTGCATAATATGTCAGGATGAATATAAGAACAAAGAGGAGATTGGAATTCTTCAATGTGGACATGAATACCATGCAGATTGTGTAAGGAGATGGTTACAAGAAAAAAATGTTTGTCCCCTGTGCAAATCAAAAGCATTGACTATTGGATAG 1035 0.4019 MNEMSEQGFQSESTDPGRTNISEPEPNMLRVIVVEGNTMDSHFLLDAYYDNRMVYGMTQLNGVQHQPSFDIGVSHHISVTDSSNAIGIPFSHSFGSWGSLIQDPTPSANVSSLENSRMNLQRYHDTTGSRRGHRFAHQHYHHHAHYHHHAHYHHHAQPVQVQQIRSQSNFRARRGNMHRGHSNFHVRRGNMYNHPPRGHSNFHAPRDNMHNLPPRAFLQEVASFRDHHNDIQLDIDDMSYEASLLCIELLILGEEIGNVERGLSEEIIARRMLTKTYLLPNNLEGSSSEEQEIDLCIICQDEYKNKEEIGILQCGHEYHADCVRRWLQEKNVCPLCKSKALTIG* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00579 344 SMART ring_2 296 336 IPR001841 -
Phac6g00579 344 MobiDBLite consensus disorder prediction 1 21 - -
Phac6g00579 344 MobiDBLite consensus disorder prediction 141 155 - -
Phac6g00579 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 341 IPR013083 -
Phac6g00579 344 ProSiteProfiles Zinc finger RING-type profile. 296 337 IPR001841 -
Phac6g00579 344 MobiDBLite consensus disorder prediction 141 161 - -
Phac6g00579 344 Pfam Ring finger domain 295 337 IPR001841 -
Phac6g00579 344 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 105 341 IPR045191 GO:0061630
Phac6g00579 344 CDD RING-H2_RNF24-like 294 340 - -
Phac6g00579 344 SUPERFAMILY RING/U-box 295 340 - -
Phac6g00579 344 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00579 Phac-Chr6 10808167 10809598 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00579 219 341 C3H Transcription Factor Family AT2G15530 44.000 1.61e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00579 K19041 - pvu:PHAVU_006G035700g 532.332