Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00578 ATGAACGAGATGAGTGAACAAGGGTTTCAATCTGAAAGCACCGATCCTGGGAGGACAAACATTTCTGAACCTGAACCTAATATGTTAAGAGTAATAGTGGTGGAAGGAAATACAATGGATTCCCATTTCTTACTGGACGCTTATTATGACAATAGGATGGTGTATGGAATGACACAACTCAATGGAGTTCAGCATCAACCTAGTTTTGACATTGGTGTTTCACATCATATTAGTGTTACAGATTCATCTAATGCAATTGGCATCCCCTTCTCTCATAGCTTTGGCTCTTGGGGATCTTTGATTCAAGATCCAACTCCCAGTGCTAATGTAAGTTCATTAGAGAATTCAAGAATGAATCTCCAAAGATATCATGATACAACTGGAAGTAGAAGGGGCCACAGATTTGCCCATCAGCACTACCATCATCATGCACAGCCTGTGCATGTGCAAGAGATGAGAAGTCACTCCAACTTTCATGTTCATAGAGGCAACATGCATAATCATCCTCCTAGAGGTCACTCTAACTTTCATGCTCCTAGAGGCAACATGCATAACCTTCCTCCTAGGGCCTTTCTTCAGGAAGTTGCTTCATTCCGTGACCATCATAATGATATACAATTGGACATTGACGACATGTCATATGAGGCAAGTGAAGAGATTGGCAACGTAGAGAGGGGTTTGTCAGAAGAAATTATTGCAAGACAAATGCTAACAAAAACTTATCTACTACCTAATAACTTGGAGGGGTCAAGTTCTAAGGAACAGGAAATTGATCTGTGCATCATATGTCAGGATGAATATAAGAACAAAGAGGAGATTGGAATTCTTCAATGCGGACATGAATACCATGCAGATTGTGTAAGGAGATGGTTACAAGAGAAAAATGTTTGTCCCCTGTGCAAATCAAAAGCATTGACTATTGGATAG 927 0.4024 MNEMSEQGFQSESTDPGRTNISEPEPNMLRVIVVEGNTMDSHFLLDAYYDNRMVYGMTQLNGVQHQPSFDIGVSHHISVTDSSNAIGIPFSHSFGSWGSLIQDPTPSANVSSLENSRMNLQRYHDTTGSRRGHRFAHQHYHHHAQPVHVQEMRSHSNFHVHRGNMHNHPPRGHSNFHAPRGNMHNLPPRAFLQEVASFRDHHNDIQLDIDDMSYEASEEIGNVERGLSEEIIARQMLTKTYLLPNNLEGSSSKEQEIDLCIICQDEYKNKEEIGILQCGHEYHADCVRRWLQEKNVCPLCKSKALTIG* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00578 308 MobiDBLite consensus disorder prediction 1 21 - -
Phac6g00578 308 Pfam Ring finger domain 259 301 IPR001841 -
Phac6g00578 308 SMART ring_2 260 300 IPR001841 -
Phac6g00578 308 SUPERFAMILY RING/U-box 259 304 - -
Phac6g00578 308 CDD RING-H2_RNF24-like 258 304 - -
Phac6g00578 308 ProSiteProfiles Zinc finger RING-type profile. 260 301 IPR001841 -
Phac6g00578 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 305 IPR013083 -
Phac6g00578 308 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 96 305 IPR045191 GO:0061630
Phac6g00578 308 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00578 Phac-Chr6 10796293 10797649 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00578 193 305 C3H Transcription Factor Family AT2G15530 42.017 9.56e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00578 K19041 - pvu:PHAVU_006G035700g 491.115