Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00576 ATGAGTGAACAAGGGTTTCAATCTGAAAGCACCGATCCTGGGAGGACAAACATTTCTGAACCTGAACCTAATATGTTAAGAGTAATAGTGGTGGAAGGAAATACAATGGATTCCCATTTCTTACTGGACGCTTATTATGACAATAGGATGGTGTATGGAATGACACAACTCAATGGAGTTCAGCATCAACCTAGTTTTGACATTGGTGTTTCACATCATATTAGTGTTACAGATTCATCTAATGCAATTGGCATCCCCTTCTCTCATAGCTTTGGCTCTTGGGGATCTTTGATTCAAGCTCCAACACCCAGTGCTAATGTAAGTTCATTAGAGAATTCAAGAATGAATCTCCAAAGATATCATGATACAACTGGAAGTAGAAGGGGCCACAGATTTGCCCATCAGCACTACCATCATCATGCACACTACCATCATCATCCACAACCTGTGCAAGTGCAACAGATCAGAAGTCAATCCAACTTTCGTGCTCGTAGAGGCAACATGCATAGAGGTCACTCCAACTTTCATGTTCGTAGAGGCAACATGCATAATCATCCTCCTAGAGGTCACTCCAACTTTCATGCTCCTAGAGACAACATGCATAACCTTCCTCCTAGGGCCTTTCTTCAGGAAGTTGCTTCATTCCGTGACCATCATAGTGATATACAATTGGACATTGACAACATGTCATATGAGGAGCTTCTTATATTAGGTGAAGAGATTGGCAACGCAGAGAGGGGTTTGTCAGATGAAATTATTGCAAGACAAATGCTAACAAAAACTTATCTACTACCTAATAACTTGGAGGGGTCAACTTCTGAGGAACAGGAAATTGATTTGTGCATAATATGTCAGGATGAATATAAGGACAAAGAGGAGATTGGAATTCTTCAATGCGGACATGAATACCATGCAGATTGTGTAAGGAGATGGTTACAAGAGAAAAATGTCTGTCCCCTGTGCAAATCAAAAGCATTGACCATTGGATAG 990 0.4081 MSEQGFQSESTDPGRTNISEPEPNMLRVIVVEGNTMDSHFLLDAYYDNRMVYGMTQLNGVQHQPSFDIGVSHHISVTDSSNAIGIPFSHSFGSWGSLIQAPTPSANVSSLENSRMNLQRYHDTTGSRRGHRFAHQHYHHHAHYHHHPQPVQVQQIRSQSNFRARRGNMHRGHSNFHVRRGNMHNHPPRGHSNFHAPRDNMHNLPPRAFLQEVASFRDHHSDIQLDIDNMSYEELLILGEEIGNAERGLSDEIIARQMLTKTYLLPNNLEGSTSEEQEIDLCIICQDEYKDKEEIGILQCGHEYHADCVRRWLQEKNVCPLCKSKALTIG* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00576 329 MobiDBLite consensus disorder prediction 1 21 - -
Phac6g00576 329 SUPERFAMILY RING/U-box 280 325 - -
Phac6g00576 329 SMART ring_2 281 321 IPR001841 -
Phac6g00576 329 CDD RING-H2_RNF24-like 279 325 - -
Phac6g00576 329 MobiDBLite consensus disorder prediction 1 18 - -
Phac6g00576 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 326 IPR013083 -
Phac6g00576 329 ProSiteProfiles Zinc finger RING-type profile. 281 322 IPR001841 -
Phac6g00576 329 Pfam Ring finger domain 280 322 IPR001841 -
Phac6g00576 329 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 100 326 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00576 Phac-Chr6 10785291 10786699 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00576 210 326 C3H Transcription Factor Family AT2G15530 45.299 5.90e-32 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00576 K19041 - pvu:PHAVU_006G035700g 527.324