Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00574 ATGAGTGAACAAGGGTTTCAATCTGAAAGCACCGATCCTGGGAGAACAAACATTTCTGAACCTGAACCTAATATGTTAAGAGTAATAGTGGTGGAAGGAAATACAATGGATTCCCATTTCTTACTAGACGCTTATTATGACAATAGTCATAGCTTTGGCTCTTGGGGATCTTTGATTCAAGATCCAACTCCCAGTGCTAATGTAAGTTCATTAGAGAATTCAAGAATGAATCTCCAAAGATATCATGATACAACTGGAAGTAGAAGGGGCCACAGATTTGCCCATCAGCACTACCATCATCATGCACACTACCATCATCATGCACAGCCTGTACAAGTGCAACAGATCAGAAGTCAATCCAACTTTCGTGCTCGTAGAGGCAACATGCATAGAGGTCACTCCAACTTTCATGTTCATAGAGGCAACATGCATAATCATCCTCCTAGAGGTCACTCCAACTTTCATGCTCCTAGAGGCAACATGCATAACCTTCCTCCTAGGGCCTTTCTTCAGGAAGTTGCTTCATTCCGTGACCATCATAGTGATATACAATTGGACATTGACGACATGTCATATGAGGAGCTTCTTATATTAGGTGAAGAGATTGGCAACGTAGAGAGGGGTTTGTCAGAAGAAATTATTGCAAGACAAATGCTAACAAAAACTTATCTATTACCTAATAACTTGGAGGGGTCAACTTCTAAGGAACAGGAAATTGAAATTGATCTGTGCATAATATGTCAGGATGAATATAAGAACAAAGAGGAGATTGGAATTCTTCAATGTGGACATGAATACCATGCAGATTGTGTAAGGAGATGGTTACAAGAGAAAAATGTCTGTCCCCTGTGCAAATCAAAAGCATTGACTATTGGATAG 879 0.4005 MSEQGFQSESTDPGRTNISEPEPNMLRVIVVEGNTMDSHFLLDAYYDNSHSFGSWGSLIQDPTPSANVSSLENSRMNLQRYHDTTGSRRGHRFAHQHYHHHAHYHHHAQPVQVQQIRSQSNFRARRGNMHRGHSNFHVHRGNMHNHPPRGHSNFHAPRGNMHNLPPRAFLQEVASFRDHHSDIQLDIDDMSYEELLILGEEIGNVERGLSEEIIARQMLTKTYLLPNNLEGSTSKEQEIEIDLCIICQDEYKNKEEIGILQCGHEYHADCVRRWLQEKNVCPLCKSKALTIG* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00574 292 SUPERFAMILY RING/U-box 233 288 - -
Phac6g00574 292 CDD RING-H2_RNF24-like 242 288 - -
Phac6g00574 292 SMART ring_2 244 284 IPR001841 -
Phac6g00574 292 MobiDBLite consensus disorder prediction 1 18 - -
Phac6g00574 292 MobiDBLite consensus disorder prediction 1 23 - -
Phac6g00574 292 Pfam Ring finger domain 243 285 IPR001841 -
Phac6g00574 292 ProSiteProfiles Zinc finger RING-type profile. 244 285 IPR001841 -
Phac6g00574 292 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 61 289 IPR045191 GO:0061630
Phac6g00574 292 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 289 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00574 Phac-Chr6 10773887 10775186 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00574 171 289 C3H Transcription Factor Family AT2G15530 44.538 1.99e-31 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00574 K19041 - pvu:PHAVU_006G035700g 441.425