Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00458 ATGGAGCTTCCAAATCAAGCTCAAGAAGGATCTTCTCAAAAGAAGATGGGAAGAGGGAAGATTGAAATCAAACGGATCGAGAACACCACAAATAGGCAAGTCACCTTCTGCAAACGCCGCAACGGTTTGCTGAAGAAAGCTTATGAATTGTCAGTTCTGTGTGATGCTGAAGTTGCCCTTGTTGTCTTCTCAAGCCGTGGCCGTTTGTATGAGTATGCCAACAACAGGTTATACCAACACACAAACCCTTCTTAA 255 0.4392 MELPNQAQEGSSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNRLYQHTNPS* 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00458 84 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Phac6g00458 84 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Phac6g00458 84 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Phac6g00458 84 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Phac6g00458 84 MobiDBLite consensus disorder prediction 1 20 - -
Phac6g00458 84 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Phac6g00458 84 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Phac6g00458 84 Gene3D - 28 83 IPR036879 GO:0003677|GO:0046983
Phac6g00458 84 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Phac6g00458 84 CDD MADS_MEF2_like 17 75 IPR033896 GO:0000977|GO:0045944
Phac6g00458 84 FunFam MADS-box transcription factor 21 28 83 - -
Phac6g00458 84 SUPERFAMILY SRF-like 16 79 IPR036879 GO:0003677|GO:0046983
Phac6g00458 84 PANTHER SERUM RESPONSE FACTOR HOMOLOG 16 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00458 Phac-Chr6 9440002 9441230 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00458 1 77 MADS-box Gene Family AT3G58780 80.519 2.71e-40 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phac6g00458 SRF-TF 1.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00458 K09264 - pvu:PHAVU_006G034400g 170.629