Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00446 ATGGACAAAAATTATGGGGATTCTTCACCAGCTCATGTTGCCACAGGTTCATCTGAGATTTCCTCACTGAATGCTCGGAAAAAAGTGGCAAGCAGTGCATGGGGAATACCACGAGCAACTGATGTGTTCCATGATTCAAGTGATATTAGCTTGTTTTCTAGTTCACTGCCTGTTCTTCCACATGAAAAGTTTGATGATAACTTGCTAACATTAGAGAAAGTTCATAAAGAAGAAGAGGGACATGATCCTTTTGATGATTTTGAAACCAGTGGAATAGGGAACATGCTTCCTGATGATGAAGAGGAGCTTTTAGCTGGGATTATGGATGATTTTGACCTCAGTAAATTGCCCAACCAACTGGAGGATTTAGATGAAAATGATCTGTTTGTCAATGGAGGAGAATTTGAGATGGATTGTGATCCCCAAGAGAGCCTTAACATTGGCATGACCAAGATAACCATATCAGATGGAGTTGCTTCAAATGGTATTGGTCACTATGCTATCCCAAATGGTGTTGGAACTGTAGCTGGGGAGCATCCCTATGGAGAGCATCCATCAAGGACACTATTTGTTCGAAACATCAACAGTAACGTTGAGGACTCTGAATTACGAACACTATTTGAGCAATATGGGGATATCAGAACTTTGTACACAGCATGCAAACATAGAGGCTTTGTGATGATATCATACTACGACATTCGAGCTGCTCGTACTGCCATGCGTACTTTACAAAACAAACCCTTGAGACGTAGAAAACTTGATATTCATTTTTCAATTCCGAAGGATAACCCTTCAGAAAAAGATATAAATCAAGGAACCCTTGTAGTGTTCAATTTAGACCCATCCGTCTCAAATGATGACCTTCGGCAAATATTTGGGGCTTATGGTGAGGTCAAGGAGATCAGGGAAACACCGCATAAGAGGCACCATAAATTTATTGAATTTTATGACGTTAGAGCAGCAGAGGCAGCTCTTAAAGCATTAAATCGAAGGGACATTGCTGGGAAACGCATAAAACTTGAACCCAGTCGCCCTGGTGGAGCACGTAGAAACTTGATGCAACAACTGAGTCAGGAACTGGAACAAGATGAAGCCCGAACTTTTAGGCATCAAGTAGGTTCACCCTTGGCCAATTCTCCTCCTGGTACCTGGGCACAATTTGGTAGTCCGGTTGAACATAATCCATTAGGTTCTTTTAGCAAGTCCCCTGGTTTGGGTCATGCCAGTCCAATTAATACCAGCCATTTGTCTGGATTGGCTGCAATTCTTTCGCCACATGCAACAACCTCTCCCAAGATTGCGCCAATTGGCAAGGACCCTGGAAGAATTACAAATCAGCTGTTTTCAAACTCCGGATCAACACAGGGAGCAGCTTTTCAGCAGTCTATGTCCTTTCCTGAGAAAAATGTAAATGCAAGTCCTAGGCCTATATCTAATTTTGGTGAATCAAATTCAGGTGCATCAAGTATTGGAACACTGTCTGGTCCTCAATTTCTTTGGGGAAGTCCAACTCCTTACTCTGAGCATTCAAACACTTCATGGTCTTCATCTTCTGTGGGGCTTCCATTTACGACTGGAGTCCAAAGGCAGGGTTTTCCTTATACTAGTCATCGAAGTCCTTTTCTTGGCTCCCATTCCCATCATCATGTTGGATCTGCTCCATCTGGCCTTCCACTTGATAGGCATTTTAGCTACTTCCCTGAATCACCTGAAGCTTCTCTCATGAGCCCTGTTGGGTTTGGGAATTTAAATCAGAGTGAAGGGAATTTTATGATGAACATGGGTGGTCATGCATCCATAGGAGCTGGTCTGTCAGGAAATACCGCTGAAATTAGTTCTCCTAATTTCAGAATGATGTCACTTCCTAGGCCTGGTTCCTTGTTCCTTGGAAATAGTTCGTATACTGGACAAGGAGCATCTAACATTGATGGATTAGCTGGACGTGGACAAAGTAGACGACCTGACAATGCTGGGAACCAAATGGAAAGTAAGAAATTGTACCAGCTTGATCTAGACAAAATTGTCAGTGGTGAAGATGCAAGAACTACTTTAATGATTAAAAACATTCCTAACAAGTATACCTCAAAGATGTTGCTTGCTGCAATTGATGAGAATCACCGGGGTACTTATGACTTTCTGTACTTGCCAATTGACTTTAAGAATAAGTGTAATGTGGGTTATGCTTTTATCAACATGGTGTCTCCTTCACACATCATCCCCTTCTATAAGGCCTTGAATGGGAAAAAGTGGGAGAAGTTCAACAGTGAGAAGGTTGCTTCACTGGCATATGCACGGATACAAGGAAAGGCTGCACTTGTGATGCATTTTCAGAATTCAAGCTTAATGAATGAGGACAAACGATGCCGGCCAATTCTTTTTCATTCAGAGGGCCAGGATACTAGTGACCAGGAACATTTTCTGTCCAGCAATTTGAACATATGCATTCGTCAACCAGATGGATCCTATTCAGGTGACTTGTTGGAGAGCCCAAAGGGCAATTTGGATCTGAAGTTAGAGAAAGATTAA 2526 0.4224 MDKNYGDSSPAHVATGSSEISSLNARKKVASSAWGIPRATDVFHDSSDISLFSSSLPVLPHEKFDDNLLTLEKVHKEEEGHDPFDDFETSGIGNMLPDDEEELLAGIMDDFDLSKLPNQLEDLDENDLFVNGGEFEMDCDPQESLNIGMTKITISDGVASNGIGHYAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRTLQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRRDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEARTFRHQVGSPLANSPPGTWAQFGSPVEHNPLGSFSKSPGLGHASPINTSHLSGLAAILSPHATTSPKIAPIGKDPGRITNQLFSNSGSTQGAAFQQSMSFPEKNVNASPRPISNFGESNSGASSIGTLSGPQFLWGSPTPYSEHSNTSWSSSSVGLPFTTGVQRQGFPYTSHRSPFLGSHSHHHVGSAPSGLPLDRHFSYFPESPEASLMSPVGFGNLNQSEGNFMMNMGGHASIGAGLSGNTAEISSPNFRMMSLPRPGSLFLGNSSYTGQGASNIDGLAGRGQSRRPDNAGNQMESKKLYQLDLDKIVSGEDARTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKALNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTSDQEHFLSSNLNICIRQPDGSYSGDLLESPKGNLDLKLEKD* 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00446 841 CDD RRM1_MEI2_like 186 262 IPR034453 -
Phac6g00446 841 FunFam MEI2-like protein 5 isoform 2 176 270 - -
Phac6g00446 841 MobiDBLite consensus disorder prediction 373 405 - -
Phac6g00446 841 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 253 IPR000504 GO:0003723
Phac6g00446 841 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 274 339 IPR000504 GO:0003723
Phac6g00446 841 MobiDBLite consensus disorder prediction 443 488 - -
Phac6g00446 841 Pfam RNA recognition motif 2 681 777 IPR007201 -
Phac6g00446 841 FunFam Protein MEI2-like 1 271 366 - -
Phac6g00446 841 SUPERFAMILY RNA-binding domain, RBD 683 768 IPR035979 GO:0003676
Phac6g00446 841 PANTHER RNA RECOGNITION MOTIF-CONTAINING 51 812 - -
Phac6g00446 841 CDD RRM3_MEI2_like 684 769 IPR034454 -
Phac6g00446 841 CDD RRM2_MEI2_like 271 341 - -
Phac6g00446 841 Gene3D - 176 270 IPR012677 -
Phac6g00446 841 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 260 IPR000504 GO:0003723
Phac6g00446 841 MobiDBLite consensus disorder prediction 431 488 - -
Phac6g00446 841 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 272 345 IPR000504 GO:0003723
Phac6g00446 841 MobiDBLite consensus disorder prediction 1 25 - -
Phac6g00446 841 Gene3D - 271 369 IPR012677 -
Phac6g00446 841 SMART rrm1_1 683 759 IPR000504 GO:0003723
Phac6g00446 841 SMART rrm1_1 273 341 IPR000504 GO:0003723
Phac6g00446 841 SMART rrm1_1 188 256 IPR000504 GO:0003723
Phac6g00446 841 MobiDBLite consensus disorder prediction 10 25 - -
Phac6g00446 841 SUPERFAMILY RNA-binding domain, RBD 184 347 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00446 Phac-Chr6 9240007 9250625 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00446 182 358 Eukaryotic Initiation Factors Gene Family AT3G16380 25.758 4.29e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00446 - - gmx:100812324 1496.49