Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00407 ATGTGGCCCGGGGTGTCGAGGTCATTCAACCACAACCTTTCACCTCACCACGACATCTTCGTGGTGGCGCCCGCGTCGTCGTTCCACCACCACCACCACAACGACGCTGTTTTGTCCGATCCAAGCAACAACAGTTCCAACGGAACTGCACTCGGCGTCAACGTCTTCCCTCTCCTCACCGCCACACCATGCCTCGCTCCCGAGAGCGAGGGCATAATGGGAAACATCAATAACCACCGTAACAGAATTCAGCTATGGCAACCACAGGAATCACCACAACACCAACACGCCGACGGCGTCTTGGCGAGTAACCACCGTGGCAGAATTCAGTTATGGCAAGAGCACGACGAGTCTCCGCCGCAGCAGCAGCAACATCCGAACGCGCACGTGCACGAGCGTGAGGGGAGTGGGAGTGGAAGCGGCACGAGCACGTGCCAGGACTGTGGAAACCAGGCGAAAAAGGATTGCAGTCACAGGAGGTGCAGGACGTGCTGCAAGAGTAGGGGTTTCGATTGCGTCACGCACGTGAAGAGCACGTGGGTGCCGGCGGCGCGGCGGAGGGAGCGCCAGCTCATGACGGTGACAGCAGCGGTTGGGTCCAGTGGGTCCACTTCCGTCACCAAGAAACCTAGGCTCGTGCCTTCCCAGACCACAACCACTTCGCACACTTCCACGTCTAATAACACCACCACTCCTCCTAGGAGTTTCGACACTGGTTCTAGCCACCAAGATGTGAGTTTCAAGGAGTCACTACCTTGCCAAGTGCGTGCACCAGCAGAGTTCAAATGTGTTCGTGTGACTGCAGTGGATGATGGGGATGATGAGTATGCCTATCAAGCTGTGGTGAAAATTGGTGGACATGTGTTCAAAGGGTTTCTCTATGATCAAGGGGTTGAGGATAAAAGTGAGTATCCTAATCTATCTGAATTGCATTTGGGTGGTGGTGGAAATGTTGCAAGTGGAAGTGATGGCGGTGGTAGAAATGGGGTTTCTTCTTCCTCTCCAATGGTGGATCCTTCTGATGTCTATGCAGCTTCTGGTGGAGTGTTACTAGGAGGTTCATCAAACTATGATCGGTGGATTACAGAGGAGCCACATCATGTCAAGAGAATAGTTTATGTACTAAATTAA 1131 0.5349 MWPGVSRSFNHNLSPHHDIFVVAPASSFHHHHHNDAVLSDPSNNSSNGTALGVNVFPLLTATPCLAPESEGIMGNINNHRNRIQLWQPQESPQHQHADGVLASNHRGRIQLWQEHDESPPQQQQHPNAHVHEREGSGSGSGTSTCQDCGNQAKKDCSHRRCRTCCKSRGFDCVTHVKSTWVPAARRRERQLMTVTAAVGSSGSTSVTKKPRLVPSQTTTTSHTSTSNNTTTPPRSFDTGSSHQDVSFKESLPCQVRAPAEFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQGVEDKSEYPNLSELHLGGGGNVASGSDGGGRNGVSSSSPMVDPSDVYAASGGVLLGGSSNYDRWITEEPHHVKRIVYVLN* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00407 376 NCBIfam LRP1 C-terminal domain 251 298 IPR006511 -
Phac6g00407 376 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 26 346 IPR007818 GO:0003700|GO:0006355
Phac6g00407 376 MobiDBLite consensus disorder prediction 136 151 - -
Phac6g00407 376 Pfam Domain of unknown function (DUF702) 142 299 - -
Phac6g00407 376 NCBIfam putative zinc finger domain, LRP1 type 144 186 IPR006510 -
Phac6g00407 376 MobiDBLite consensus disorder prediction 315 337 - -
Phac6g00407 376 MobiDBLite consensus disorder prediction 197 243 - -
Phac6g00407 376 MobiDBLite consensus disorder prediction 115 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00407 Phac-Chr6 8510334 8515365 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00407 145 302 C2H2 Transcription Factor Family AT5G66350 51.572 7.99e-48 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Phac6g00407 DUF702 2.4e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00407 - - gmx:100816514 478.018