Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00388 ATGGCAGCGGGAACAACAACTGAAGTAAGAGAGAGAGTTGGGTTGGTGAAGGTTTCCAAGAAGGAGATGGAACGAAGTGGTGGAATGGTAACTGGGTCGCATGAAAGGAATGAACTTGTTACAGTTAGACACGGTTCTGATAGTGGGTCTAAACCCTTAAAGAATTTAAATGGTCAGATTTGTCAAATATGTGGTGATACCATTGGATTAACGGCTACTGGTGATGTCTTTGTTGCTTGTCATGAGTGTGGCTTCCCACTTTGTCATTCTTGTTACGAGTATGAGCTGAAAAATGTGAGCCAATCATGTCCCCAGTGCAAGACTAGATTCACAAGTCACCAAGAGGGTGCTGGAGTGGAGGGTGATGATGATGATGATGAAGATGCTGATGATCTAGATAATGAGATCAACTATGGCCAAGGAAACAATTCCAAGGCAGGGATGCAATGGGAAGAAGATGCTGACTTCTCTTCATCTTCTGGACATGATTCTCAAATACCAAATCCGCATCTAGCAAACGGGCAACCGATGTCTGGTGATATTCCATGTGCTACTTCTGATGCCCAATCTATGCAAACTACATCAGGTCCTATGGCTGCTGCAAAGCAACCGGGTCCTGAAAGTGACGAAGAGATAAGGAGAGTGCCGGAGATCGGAGGTGAAAGTGCTGGAACTGCAGCCTCTCGGCCGGATGCCAGATCAAATGCTGGTGCAGAACGTGTTCAGGGTACAGGAGAGGGTCAGAAGAAGAGAGGGAGAAGCCCAGCTGATAAAGAAAGCAAACGGCTAAAGAGGCTATTGAGGAACAGAGTTTCGGCTCAACAAGCAAGGGAGAGGAAGAAGGCATACTTGATTGATTTGGAAACAAGAGTCAAAGACTTGGAGAAGAAGAATTCAGAGCTCAAGGAAAGACTTTCTACTTTGCAGAATGAGAACCAAATGCTTAGACAAGTATGCTAG 960 0.4542 MAAGTTTEVRERVGLVKVSKKEMERSGGMVTGSHERNELVTVRHGSDSGSKPLKNLNGQICQICGDTIGLTATGDVFVACHECGFPLCHSCYEYELKNVSQSCPQCKTRFTSHQEGAGVEGDDDDDEDADDLDNEINYGQGNNSKAGMQWEEDADFSSSSGHDSQIPNPHLANGQPMSGDIPCATSDAQSMQTTSGPMAAAKQPGPESDEEIRRVPEIGGESAGTAASRPDARSNAGAERVQGTGEGQKKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYLIDLETRVKDLEKKNSELKERLSTLQNENQMLRQVC* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00388 319 Gene3D Single helix bin 280 319 - -
Phac6g00388 319 MobiDBLite consensus disorder prediction 112 282 - -
Phac6g00388 319 FunFam Cellulose synthase A catalytic subunit 1 [UDP-forming] 44 135 - -
Phac6g00388 319 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 188 317 IPR044280 GO:0000981|GO:0045944
Phac6g00388 319 CDD mRING-HC-C4C4_CesA 59 109 - -
Phac6g00388 319 MobiDBLite consensus disorder prediction 179 199 - -
Phac6g00388 319 SMART brlzneu 257 319 IPR004827 GO:0003700|GO:0006355
Phac6g00388 319 MobiDBLite consensus disorder prediction 244 282 - -
Phac6g00388 319 MobiDBLite consensus disorder prediction 119 134 - -
Phac6g00388 319 SUPERFAMILY Leucine zipper domain 261 317 IPR046347 GO:0003700|GO:0006355
Phac6g00388 319 Pfam bZIP transcription factor 258 317 IPR004827 GO:0003700|GO:0006355
Phac6g00388 319 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 264 279 IPR004827 GO:0003700|GO:0006355
Phac6g00388 319 MobiDBLite consensus disorder prediction 136 172 - -
Phac6g00388 319 Pfam Zinc-binding RING-finger 51 127 IPR027934 -
Phac6g00388 319 CDD bZIP_HY5-like 262 313 - -
Phac6g00388 319 ProSiteProfiles Zinc finger RING-type profile. 61 107 IPR001841 -
Phac6g00388 319 Coils Coil 256 318 - -
Phac6g00388 319 SUPERFAMILY RING/U-box 45 131 - -
Phac6g00388 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 135 IPR013083 -
Phac6g00388 319 FunFam Transcription factor HY5 280 319 - -
Phac6g00388 319 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 259 319 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00388 Phac-Chr6 8192647 8197012 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00388 23 203 Glycosyltransferase AT4G32410 56.906 5.69e-54 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phac6g00388 zf-UDP 4.4e-37 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00388 K10999 - gmx:548004 536.569