Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00375 ATGAACAACAGTGTTCCTGATTGGAATTTTGGGAGTGATTCCTGTGTCACCACCAATCCAAAGAAGCCTATGGGGGTGGACCAAGAGCTTGTGGAGCTCCTGTGGCAAAATGGCCAGGTTGTGTTGCACAGCCAAACACATAGAAAACCGGTTGTGAATTCGATCGCTCCGAGACCGCTTCAGAGAGCTTTTCAATCAACATTAAGGACCAGTGAGCCATTTGGGAACTCGAGTAACTTGATTCAAGATGATGAGACAGTCTCATGGATCCAATACCCCCTTGAGGATCCATTGGAACAAGAATTCTGTTCAAACCTTTTATCTGAACTGCCACAGTGTGATGTTGAGTCCTATAAGCAAATTAAGCCATTTGAAGAGGGAAAGTTTACTAAATTGGATGCTTCTAGTGCCCCCCATGTGACTGTATGTTCACAATCACCTACTATGAAACCATCCTCTTTTCAGGAATTCTCAGGAATTCCAATACCTGCTCCAAGATTCCATGTTTCTGATTCACCTCAGAAAAATAATAATGACTTGGGTGGACCATGTAAGGTCCAAAAATTCTCTCACTTTTCACCTACCTTTAATGTTTCTTCAGCATTGCCTAGTGCGCATTTTAGAGACAAAATTACTTGTAACATGTCAAAAAATGAGGTTAGAGAGTGCTCATTGATGACAGTTGGATCAAGTTACAGTGGTAGCAATCACATGACCCAAGATCCAGATGCTAGCAGGGCATCAAGCAATGGTGTTTGGACTACTACTTTATCTGTTGACCCTGAAGCTGTCAGAGATGATGTGCCGAGAACAATTCCTCTGAGTGAGAAAGGGAAATCAGAGATGCTTGAACCAGCTGCTACTTCATCTTCTGGTGGCTCAGGTAGTAGTCTTGGAAAAACTTGTTCCTTATCTACCAGAAACCAGAGCCAAAAAAGAAAAACAGTAGACATTGAAGAATCTGAGGAGCATAGTGAGGACACAGAACTTAAATCACCAGTTGGAAACAAGACATCTCAACGGACAGGGTCGGCTCGAAGGAACCGTGCTGCTGAAGTGCATAATCTATCAGAAAGGAGAAGGAGAGATAGGATCAATGAGAAGATGAAAGCATTGCAACAACTCATACCTCACAGTAGCAAGACAGACAAAGCATCAATGTTGGAGGAGGCAATCGAATATTTGAAATCACTTCAGTTACAACTTCAGGAATTCAGCACTATATGTCTCAAATGGGTATGGGAATGGCTACATCTCCTTTCCCTCCTATTCAAAATCCGATGCAATTACCACGAGTACCGCTTGATCAGCCCGTATCTGCATCTCAGACACCAAACCAGACAATGA 1347 0.4284 MNNSVPDWNFGSDSCVTTNPKKPMGVDQELVELLWQNGQVVLHSQTHRKPVVNSIAPRPLQRAFQSTLRTSEPFGNSSNLIQDDETVSWIQYPLEDPLEQEFCSNLLSELPQCDVESYKQIKPFEEGKFTKLDASSAPHVTVCSQSPTMKPSSFQEFSGIPIPAPRFHVSDSPQKNNNDLGGPCKVQKFSHFSPTFNVSSALPSAHFRDKITCNMSKNEVRECSLMTVGSSYSGSNHMTQDPDASRASSNGVWTTTLSVDPEAVRDDVPRTIPLSEKGKSEMLEPAATSSSGGSGSSLGKTCSLSTRNQSQKRKTVDIEESEEHSEDTELKSPVGNKTSQRTGSARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQEFSTICLKWVWEWLHLLSLLFKIRCNYHEYRLISPYLHLRHQTRQ* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00375 448 Pfam Helix-loop-helix DNA-binding domain 353 399 IPR011598 GO:0046983
Phac6g00375 448 Coils Coil 355 375 - -
Phac6g00375 448 FunFam Basic helix-loop-helix transcription factor 344 407 - -
Phac6g00375 448 CDD bHLH_AtPIF_like 349 407 IPR047265 -
Phac6g00375 448 MobiDBLite consensus disorder prediction 312 331 - -
Phac6g00375 448 MobiDBLite consensus disorder prediction 332 346 - -
Phac6g00375 448 Gene3D - 344 407 IPR036638 GO:0046983
Phac6g00375 448 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 349 398 IPR011598 GO:0046983
Phac6g00375 448 PANTHER TRANSCRIPTION FACTOR PIF3 17 406 IPR044273 GO:0003700|GO:0006355
Phac6g00375 448 MobiDBLite consensus disorder prediction 257 353 - -
Phac6g00375 448 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 347 415 IPR036638 GO:0046983
Phac6g00375 448 SMART finulus 355 404 IPR011598 GO:0046983
Phac6g00375 448 MobiDBLite consensus disorder prediction 284 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00375 Phac-Chr6 7986077 7991976 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00375 1 403 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 30.861 1.38e-39 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac6g00375 HLH 1.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00375 K16189 - gmx:100784531 672.93