Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00373 ATGAAACCATCCTCTTTTCAGGAATTCTCAGGAATTCCAATACCTGCTCCAAGATTCCATGTTTCTGATTCACCTCAGAAAAATAATAATGACTTGGGTGGACCATGTAAGGTCCAAAAATTCTCTCACTTTTCACCTACCTTTAATGTTTCTTCAGCATTGCCTAGTGCGCATTTTAGAGACAAAATTACTTGTAACATGTCAAAAAATGAGGTTAGAGAGTGCTCATTGATGACAGTTGGATCAAGTTACAGTGGTAGCAATCACATGACCCAAGATCCAGATGCTAGCAGGGCATCAAGCAATGGTGTTTGGACTACTACTTTATCTGTTGACCCTGAAGCTGTCAGAGATGATGTGCCGAGAACAATTCCTCTGAGTGAGAAAGGGAAATCAGAGATGCTTGAACCAGCTGCTACTTCATCTTCTGGTGGCTCAGGTAGTAGTCTTGGAAAAACTTGTTCCTTATCTACCAGAAACCAGAGCCAAAAAAGAAAAACAGTAGACATTGAAGAATCTGAGGAGCATAGTGAGGACACAGAACTTAAATCACCAGTTGGAAACAAGACATCTCAACGGACAGGGTCGGCTCGAAGGAACCGTGCTGCTGAAGTGCATAATCTATCAGAAAGGAGAAGGAGAGATAGGATCAATGAGAAGATGAAAGCATTGCAACAACTCATACCTCACAGTAGCAAGACAGACAAAGCATCAATGTTGGAGGAGGCAATCGAATATTTGAAATCACTTCAGTTACAACTTCAGCTAATGTGGATGGGATCTGGCATGACACCAATGATGTTTCCAGGAATTCAGCACTATATGTCTCAAATGGGTATGGGAATGGCTACATCTCCTTTCCCTCCTATTCAAAATCCGATGCAATTACCACGAGTACCGCTTGATCAGCCCGTATCTGCATCTCAGACACCAAACCAGACAATGATGTGTCAAAATCCTATTTTGGGTGCCTTTAATTACCAAAATCAGATGCAAAATCCAGCTCTTTCAGAGCAATATGCACGTTACATGGGCTATCATCTTATGCAAAATGCTTCTCAGCCAATGAATGTATTTAGATATGGTCCCCAGGCAGTACAGTATAGTCAAACAATGATTACACCCAGCAACAGCAGTGGAAACATGAGTGGAGCAGCAAATATTGATGAGGCTGTGAGTGACAAAATGGGTAAATTAGTTTAG 1203 0.4156 MKPSSFQEFSGIPIPAPRFHVSDSPQKNNNDLGGPCKVQKFSHFSPTFNVSSALPSAHFRDKITCNMSKNEVRECSLMTVGSSYSGSNHMTQDPDASRASSNGVWTTTLSVDPEAVRDDVPRTIPLSEKGKSEMLEPAATSSSGGSGSSLGKTCSLSTRNQSQKRKTVDIEESEEHSEDTELKSPVGNKTSQRTGSARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQLMWMGSGMTPMMFPGIQHYMSQMGMGMATSPFPPIQNPMQLPRVPLDQPVSASQTPNQTMMCQNPILGAFNYQNQMQNPALSEQYARYMGYHLMQNASQPMNVFRYGPQAVQYSQTMITPSNSSGNMSGAANIDEAVSDKMGKLV* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00373 400 SMART finulus 207 256 IPR011598 GO:0046983
Phac6g00373 400 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 101 363 IPR031066 -
Phac6g00373 400 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 199 266 IPR036638 GO:0046983
Phac6g00373 400 MobiDBLite consensus disorder prediction 1 34 - -
Phac6g00373 400 CDD bHLH_AtPIF_like 201 264 IPR047265 -
Phac6g00373 400 Coils Coil 207 227 - -
Phac6g00373 400 MobiDBLite consensus disorder prediction 109 205 - -
Phac6g00373 400 MobiDBLite consensus disorder prediction 184 198 - -
Phac6g00373 400 MobiDBLite consensus disorder prediction 164 183 - -
Phac6g00373 400 Pfam Helix-loop-helix DNA-binding domain 205 251 IPR011598 GO:0046983
Phac6g00373 400 Gene3D - 196 257 IPR036638 GO:0046983
Phac6g00373 400 MobiDBLite consensus disorder prediction 136 163 - -
Phac6g00373 400 FunFam Basic helix-loop-helix transcription factor 196 259 - -
Phac6g00373 400 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 201 250 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00373 Phac-Chr6 7986077 7991976 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00373 76 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 45.455 2.84e-47 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac6g00373 HLH 1.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00373 K16189 - gmx:100800166 677.552