Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00372 ATGAACAACAGTGTTCCTGATTGGAATTTTGGGAGTGATTCCTGTGTCACCACCAATCCAAAGAAGCCTATGGGGGTGGACCAAGAGCTTGTGGAGCTCCTGTGGCAAAATGGCCAGGTTGTGTTGCACAGCCAAACACATAGAAAACCGGTTGTGAATTCGATCGCTCCGAGACCGCTTCAGAGAGCTTTTCAATCAACATTAAGGACCAGTGAGCCATTTGGGAACTCGAGTAACTTGATTCAAGATGATGAGACAGTCTCATGGATCCAATACCCCCTTGAGGATCCATTGGAACAAGAATTCTGTTCAAACCTTTTATCTGAACTGCCACAGTGTGATGTTGAGTCCTATAAGCAAATTAAGCCATTTGAAGAGGGAAAGTTTACTAAATTGGATGCTTCTAGTGCCCCCCATGTGACTGTATGTTCACAATCACCTACTATGAAACCATCCTCTTTTCAGGAATTCTCAGGAATTCCAATACCTGCTCCAAGATTCCATGTTTCTGATTCACCTCAGAAAAATAATAATGACTTGGGTGGACCATGTAAGGTCCAAAAATTCTCTCACTTTTCACCTACCTTTAATGTTTCTTCAGCATTGCCTAGTGCGCATTTTAGAGACAAAATTACTTGTAACATGTCAAAAAATGAGGTTAGAGAGTGCTCATTGATGACAGTTGGATCAAGTTACAGTGGTAGCAATCACATGACCCAAGATCCAGATGCTAGCAGGGCATCAAGCAATGGTGTTTGGACTACTACTTTATCTGTTGACCCTGAAGCTGTCAGAGATGATGTGCCGAGAACAATTCCTCTGAGTGAGAAAGGGAAATCAGAGATGCTTGAACCAGCTGCTACTTCATCTTCTGGTGGCTCAGGTAGTAGTCTTGGAAAAACTTGTTCCTTATCTACCAGAAACCAGAGCCAAAAAAGAAAAACAGTAGACATTGAAGAATCTGAGGAGCATAGTGAGGACACAGAACTTAAATCACCAGTTGGAAACAAGACATCTCAACGGACAGGGTCGGCTCGAAGGAACCGTGCTGCTGAAGTGCATAATCTATCAGAAAGGAGAAGGAGAGATAGGATCAATGAGAAGATGAAAGCATTGCAACAACTCATACCTCACAGTAGCAAGACAGACAAAGCATCAATGTTGGAGGAGGCAATCGAATATTTGAAATCACTTCAGTTACAACTTCAGCTAATGTGGATGGGATCTGGCATGACACCAATGATGTTTCCAGGAATTCAGCACTATATGTCTCAAATGGGTATGGGAATGGCTACATCTCCTTTCCCTCCTATTCAAAATCCGATGCAATTACCACGAGTACCGCTTGATCAGCCCGTATCTGCATCTCAGACACCAAACCAGACAATGATGTGTCAAAATCCTATTTTGGGTGCCTTTAATTACCAAAATCAGATGCAAAATCCAGCTCTTTCAGAGCAATATGCACGTTACATGGGCTATCATCTTATGCAAAATGCTTCTCAGCCAATGAATGTATTTAGATATGGTCCCCAGGCAGTACAGTATAGTCAAACAATGATTACACCCAGCAACAGCAGTGGAAACATGAGTGGAGCAGCAAATATTGATGAGGCTGTGAGTGACAAAATGGGTTCTTCCACCTTTAACTAA 1653 0.4247 MNNSVPDWNFGSDSCVTTNPKKPMGVDQELVELLWQNGQVVLHSQTHRKPVVNSIAPRPLQRAFQSTLRTSEPFGNSSNLIQDDETVSWIQYPLEDPLEQEFCSNLLSELPQCDVESYKQIKPFEEGKFTKLDASSAPHVTVCSQSPTMKPSSFQEFSGIPIPAPRFHVSDSPQKNNNDLGGPCKVQKFSHFSPTFNVSSALPSAHFRDKITCNMSKNEVRECSLMTVGSSYSGSNHMTQDPDASRASSNGVWTTTLSVDPEAVRDDVPRTIPLSEKGKSEMLEPAATSSSGGSGSSLGKTCSLSTRNQSQKRKTVDIEESEEHSEDTELKSPVGNKTSQRTGSARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQLMWMGSGMTPMMFPGIQHYMSQMGMGMATSPFPPIQNPMQLPRVPLDQPVSASQTPNQTMMCQNPILGAFNYQNQMQNPALSEQYARYMGYHLMQNASQPMNVFRYGPQAVQYSQTMITPSNSSGNMSGAANIDEAVSDKMGSSTFN* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00372 550 SMART finulus 355 404 IPR011598 GO:0046983
Phac6g00372 550 Coils Coil 355 375 - -
Phac6g00372 550 FunFam Basic helix-loop-helix transcription factor 344 407 - -
Phac6g00372 550 Gene3D - 344 405 IPR036638 GO:0046983
Phac6g00372 550 MobiDBLite consensus disorder prediction 312 331 - -
Phac6g00372 550 MobiDBLite consensus disorder prediction 332 346 - -
Phac6g00372 550 PANTHER TRANSCRIPTION FACTOR PIF3 17 518 IPR044273 GO:0003700|GO:0006355
Phac6g00372 550 CDD bHLH_AtPIF_like 349 412 IPR047265 -
Phac6g00372 550 MobiDBLite consensus disorder prediction 523 550 - -
Phac6g00372 550 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 349 398 IPR011598 GO:0046983
Phac6g00372 550 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 347 414 IPR036638 GO:0046983
Phac6g00372 550 Pfam Helix-loop-helix DNA-binding domain 353 399 IPR011598 GO:0046983
Phac6g00372 550 MobiDBLite consensus disorder prediction 257 353 - -
Phac6g00372 550 MobiDBLite consensus disorder prediction 284 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00372 Phac-Chr6 7986077 7991976 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00372 1 99 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 39.815 1.54e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac6g00372 HLH 1.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00372 K16189 - gmx:100784531 931.784