Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00338 ATGCACCATTTTCTTAGTTATAGGTTAACAACTAGAACCCCCCACTTTGGTTTTCTCTGTCACAATGCGGTTCATTTCTTCATTTCAAGAACTCTATCTGTATCAAACACAAATCACCAAAAAAGTTACACCTTTAACGTATATAACATCATCAACTCATCTGGGTTGTCCTCAGAAAAAGCCCTGAAACTCACAAAAAGGTTGGAATTGAAAAACCCAGATGGGGCAAATGCTGTCATTGATCTTCTCAGGACCTACGGGTTTTCTGATACCCAATTACATAGCCTTGTAAAGAAAATCCCTTCTGTGCTTTTGTCAAAACCTGAAAAGACCCTTTTGCCAAAACTCAAGTTCTTCCATTCAATTGGGTTTTCAACGACTGACCTTCCTAGATTCCTCATTGGAAACACTTCATTTTTGAGATCTAGCTTGGACAAAACTATTATCCCCCGTTACCAGATCATCAAGAGACTAGTTCACAGTGATAAGGAAGTGGTTTCCACCTTGAAGCATGATAGGTGGCACGTCAACCGTGGAAATTTTCTGAGTTCAGTTCAAAATGTTGGGACTTTGAGACAGCTTGGGGTGCCTCAACATTCCATTTCCTTCCTTGTAACCAATTTTCCAAGTGTAACATTTATGAATCATTCGAGATTTGTTGAGGCTTTGGAGAAAGTGAAGGAAATGAGGTTTGATCCTTTGAAAGTAAATTTTGTGGTGGCACTTCAAGTGTTTGCAAAGATGAATGAAGCAATGTGGAAATCAAAATTAGAGGCTTTTGAGAGGTGGGGCTGGTCCACTGATATCTGTCTTTTAGCTTTCAGAAAGCATCCTCAGTTTCTGATGTTGTCAGACAATAAAATTATGAAAATATTGAGCTTCTTGATGAAAGATATGGGTTTGCCAGTAGAACACATTGCTGGATGCCCTGAAATTCTTAAATGCAACTTGGAGAAGACAGTTATCCCTAGATGTGCAGTTGTTAAGCTTTTGAAGTCAAGGGGTTTGATAAAGAGAGATTTGAAAATAAGTACCTTCATCAAGATCAGTGAGAAAGTGTTTTTGGAGAGATATGTGACCCGATTTCAGAAAAATGAACCACTACTATTAGATGCGTACAAAGGAATTGGGCCTCCAGTGTTTTGA 1146 0.3874 MHHFLSYRLTTRTPHFGFLCHNAVHFFISRTLSVSNTNHQKSYTFNVYNIINSSGLSSEKALKLTKRLELKNPDGANAVIDLLRTYGFSDTQLHSLVKKIPSVLLSKPEKTLLPKLKFFHSIGFSTTDLPRFLIGNTSFLRSSLDKTIIPRYQIIKRLVHSDKEVVSTLKHDRWHVNRGNFLSSVQNVGTLRQLGVPQHSISFLVTNFPSVTFMNHSRFVEALEKVKEMRFDPLKVNFVVALQVFAKMNEAMWKSKLEAFERWGWSTDICLLAFRKHPQFLMLSDNKIMKILSFLMKDMGLPVEHIAGCPEILKCNLEKTVIPRCAVVKLLKSRGLIKRDLKISTFIKISEKVFLERYVTRFQKNEPLLLDAYKGIGPPVF* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00338 381 SMART mt_12 303 337 IPR003690 GO:0003690|GO:0006355
Phac6g00338 381 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Phac6g00338 381 SMART mt_12 202 232 IPR003690 GO:0003690|GO:0006355
Phac6g00338 381 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Phac6g00338 381 SMART mt_12 271 302 IPR003690 GO:0003690|GO:0006355
Phac6g00338 381 FunFam Mitochondrial transcription termination factor-like 144 365 - -
Phac6g00338 381 PANTHER CGI-12 PROTEIN-RELATED 48 361 IPR003690 GO:0003690|GO:0006355
Phac6g00338 381 Pfam mTERF 248 355 IPR003690 GO:0003690|GO:0006355
Phac6g00338 381 Pfam mTERF 80 290 IPR003690 GO:0003690|GO:0006355
Phac6g00338 381 Gene3D Transcription termination factor 3, mitochondrial 49 176 IPR038538 -
Phac6g00338 381 Gene3D Transcription termination factor 3, mitochondrial 177 365 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00338 Phac-Chr6 7475442 7478426 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Phac6g00338 mTERF 3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00338 K15032 - gmx:106799612 576.63