Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00260 ATGTCAAGTGGAGCAAGATACTGGTGTTACTCATGCAGGCAGCCAATCAGGATTGCCGGGAGGGCCATTTGCCCTTACTGCAATGAAGGCTTCTTGCATGAACTTAATGACATGCGAGGAGTAGTGGAGCGAAGAGGTTCTGACTCAAGAACTGGGTTTAGATATGCTGTTGATAACTTCACAAGGCAGATAATGGGTGGAAGATACATAAATTTTGGTACTGGGATTAGGAGATCTGGTTCTACCCAACCTCCTGAACGGACTTGGAGTGTGTTTATGTTTCCTAGTCAAGAGTCAAGTTCTGATCCGGAAGAATTCTCTTATCAACACACTACAAATTACCAGTTTGGTGCATCACAATCTTCAATTAATGCATTGCCAACTATTAAGATCACACGTGAGCACCTCAACTTTGATTCACTGTGTCCTGTTTGTATAGAAAGATTTGAAGTGGGTTCTGAGGTCAGGAAGATGCCATGTGACCACATTTACCACTCAGACTGTATTGTTCCATGGTTAATTCAGCATAACTCGTGTCCTGTTTGCCGTGGTAAGCTTCCTCCTGAAAGACATTCGAGTTCGCGTGGTCGTGGTACTCAAATTTGGGGTGGATGGAATGCCAGTGATAATAATAGTGACTATACTATCTCTAGGGGCAGGGAGAATAGACAACTGAACAATGGATGGAGAAACCTACTGTCATTTTTTACTTTTTGTAGCCATTCTGTTGTTCTAATTCAGATACTTAATCGTTTGTGCTGA 762 0.4252 MSSGARYWCYSCRQPIRIAGRAICPYCNEGFLHELNDMRGVVERRGSDSRTGFRYAVDNFTRQIMGGRYINFGTGIRRSGSTQPPERTWSVFMFPSQESSSDPEEFSYQHTTNYQFGASQSSINALPTIKITREHLNFDSLCPVCIERFEVGSEVRKMPCDHIYHSDCIVPWLIQHNSCPVCRGKLPPERHSSSRGRGTQIWGGWNASDNNSDYTISRGRENRQLNNGWRNLLSFFTFCSHSVVLIQILNRLC* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00260 253 FunFam E3 ubiquitin-protein ligase RING1-like 106 189 - -
Phac6g00260 253 Pfam zinc-ribbon 6 35 IPR039525 GO:0061630
Phac6g00260 253 SMART ring_2 142 182 IPR001841 -
Phac6g00260 253 ProSiteProfiles Zinc finger RING-type profile. 142 183 IPR001841 -
Phac6g00260 253 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 100 187 - -
Phac6g00260 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 189 IPR013083 -
Phac6g00260 253 SUPERFAMILY RING/U-box 122 189 - -
Phac6g00260 253 Pfam Ring finger domain 142 183 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00260 Phac-Chr6 6030882 6033452 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00260 123 210 C3H Transcription Factor Family AT2G44330 43.158 2.28e-18 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00260 K11982 - gmx:100815972 315.849