Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00258 ATGTCAAGTGGAACAACATACTGGTGTTATACATGCAGGCAGCCAATCTGGCTTGAAGGGAGAGATGCCATTTGCCCTTACTGCGATGGAGGCTTTGTGCAAGAACTTAACGAGCAGCTGCGAGCAGTTTCACACCAACAAGGCTTTTCATCACAAATGGAAGATTTTCGTCAAATGCCTGATATTATGGATGCTGTAAGAGCTGTTATGGAGCAAAGAGGTTCTGAGCCAAGAATTGGGGTTAGAGATGCTGTTGACAATTTCATGAGGCAGAGAATGGCTGGAAGCTACACAAACTTTGATGTTAGAAGGAGGTTTGGCTCCACCACCACCCCACTTCCTGATCAGACTTGGGGGGTCTATAGCTCTGGTCCTTATCTGATATTTCATGGTCAACCTCCTGGCTTCACTATGTCTAACACTGGCTCTAGAAGAGGTCCTAGGCATGTTGATTTTGGTGACTACTTTCTTGGTCCTAGACTTGAAGGACTCATTGAACAACACATAACCAATGATCGCCTTGGTCCACCCCCTGCATCACGCTCTTCTATTGATGCAATGCCAACCATTAAGATCACAAATGAACACCTTCAATCTGATTCACACTGTGCAGTTTGTAAGGAAAGGTTTGAACTGAGTTCTGAGGCCAGGAAAATGCCATGTGCCCACATTTACCACTCAGACTGTATTGTTCCATGGTTAGTTCAGCACAATTCATGTCCAGTTTGCCGTGTTGAGCTGCCACCTCAAGGACACCCCAGTTCCCGCAGTAGTCGAATTAGGGGAGGAAGGAATTCTAGTGGCACTGGTAGTGACAATATCTCCAGGAGAAGAGGGAACAGAGAGATGAACAATGGAAGGAGAAATCTGCTATCATATTTGTGGCCATTTCGAACTTCTAGTTCAAATACTTGA 915 0.4536 MSSGTTYWCYTCRQPIWLEGRDAICPYCDGGFVQELNEQLRAVSHQQGFSSQMEDFRQMPDIMDAVRAVMEQRGSEPRIGVRDAVDNFMRQRMAGSYTNFDVRRRFGSTTTPLPDQTWGVYSSGPYLIFHGQPPGFTMSNTGSRRGPRHVDFGDYFLGPRLEGLIEQHITNDRLGPPPASRSSIDAMPTIKITNEHLQSDSHCAVCKERFELSSEARKMPCAHIYHSDCIVPWLVQHNSCPVCRVELPPQGHPSSRSSRIRGGRNSSGTGSDNISRRRGNREMNNGRRNLLSYLWPFRTSSSNT* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00258 304 Pfam zinc-ribbon 5 36 IPR039525 GO:0061630
Phac6g00258 304 SMART ring_2 203 243 IPR001841 -
Phac6g00258 304 FunFam E3 ubiquitin-protein ligase RING1-like 166 250 - -
Phac6g00258 304 MobiDBLite consensus disorder prediction 251 274 - -
Phac6g00258 304 MobiDBLite consensus disorder prediction 248 285 - -
Phac6g00258 304 SUPERFAMILY RING/U-box 183 250 - -
Phac6g00258 304 CDD RING-H2_RNF126-like 203 244 - -
Phac6g00258 304 Pfam Ring finger domain 202 244 IPR001841 -
Phac6g00258 304 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 94 248 - -
Phac6g00258 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 250 IPR013083 -
Phac6g00258 304 ProSiteProfiles Zinc finger RING-type profile. 203 244 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00258 Phac-Chr6 5995532 5998363 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00258 173 298 C3H Transcription Factor Family AT1G68180 42.063 2.83e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00258 K11982 - var:108344709 547.74