Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00238 ATGCAGTCACAGCGATACTACTATAACGTGTTCAACTTGAATAACCAAGACTCAACGATTGTGCCTGGTGATACTTTCAATTTCCGCATAAAAATTGTATATCACTCAGTTGACACAAATCCAGAAGGGTTGCAGAATCTATTTTCTTCATTATCAATTCCCTCTGATGATTTCTTCCGAGAGGGTCAAATTTTCTTACAGTCACTTTTTTCAGGCTTAAGCTTCTCCGTTGAATCCATTGATGAAATAACAGAAGGGGTAGTTTCTACAGTTCAAGAACTGTTTGAAGTTGGTAGCATTGATGATTTTCTCTCTTTGGAATCTCAACACCGAGTCATCCCTTTATATGTGACAATTATAATATTGGATTTTGGAATTCATGCAACTAGGGAAGAATCGTGGCAGGTTTATAGAATGAATCAGTCGAATGAAACCATAACAAAGACCTTCTTGAAGAAATGTACGGTCGTGGAAGGGAGTGATGATTGTTGCATCTGCTTAGAAGAGTTGAATATCAACTGCGAGTGCTACAGAATGCCATGCCATCATGAGTTTCATCTACAGTGTATTCTCACATGGCTCAAAACTAGTCGCGTCTGTCCCTTGTGTCGTTACTCTTTGCCAACCCTTGAAAACTAG 639 0.3897 MQSQRYYYNVFNLNNQDSTIVPGDTFNFRIKIVYHSVDTNPEGLQNLFSSLSIPSDDFFREGQIFLQSLFSGLSFSVESIDEITEGVVSTVQELFEVGSIDDFLSLESQHRVIPLYVTIIILDFGIHATREESWQVYRMNQSNETITKTFLKKCTVVEGSDDCCICLEELNINCECYRMPCHHEFHLQCILTWLKTSRVCPLCRYSLPTLEN* 213
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00238 212 ProSiteProfiles Zinc finger RING-type profile. 163 204 IPR001841 -
Phac6g00238 212 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 141 208 - -
Phac6g00238 212 Pfam Ring finger domain 161 204 IPR001841 -
Phac6g00238 212 CDD RING-H2 163 204 - -
Phac6g00238 212 SMART ring_2 163 203 IPR001841 -
Phac6g00238 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 210 IPR013083 -
Phac6g00238 212 SUPERFAMILY RING/U-box 156 209 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Phac6g00238 Phac-Chr6 5608051 5608689 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00238 125 208 C3H Transcription Factor Family AT1G18760 33.721 1.47e-13 65.5
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00238 - - pvu:PHAVU_006G017900g 372.474