Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00236 ATGCAAAGAATGCAAAGAATGCCGTCACGACGTTGCCACTATAGCCTGAACAGGGTGAATAATCAACACACCACTGTTGCTCCTGGTGATACTTTCATCCTTCACTCTCAAGTTTTATATTTTCCAATTCGCCCAGGATGGTTAGAGCATCAATTTTCTCCAAGACCAATATCCTCTCAGGATTTCTTTCAAGATGGTCAAAACTTCTTATGCTCAACCTTGTCACATTCACGCTTTGTCATTGATTCTCTTGAAGAAATGTCCCAAAGAATTGTTCATAGCGTTAGACAAATGTTTCAAGTTGGTAGCATTTCTGATTTTCTTTCTTTGGAACCTCAACACCGTGTCATCCCTTTATCGCTGTCAGTTGTAATATTGGATAATGGAATGCATGCAGCTAGTGAAGACTCCAGGCAGAGTTTTCAGAGTTCTAGAAGGAATCAGAGGCAGCGTTCTAGAAGGAATCAGAGTCAGAGGCAGACTTCTAGAAGGAATCTGAGACAGAGTTCTAGAGTGAATCGTATGTCGGAAGAAGCCATAATAAATACCTTTTTGAAGAAATGCACTGTTATGAGAGAAAGTGAAGACTGTTGTATCTGCTTGGAAGAGTTGAATATCAATGCTGAGTGTTACACAATGCCATGCCAGCATGTCTTTCACCTACCTTGTATTCTCACATGGCTCAAAACTAGTAGTGTGTGTCCCTTGTGTCGCTACTCTTTACCATCAACATCTCAAAACTAG 744 0.4073 MQRMQRMPSRRCHYSLNRVNNQHTTVAPGDTFILHSQVLYFPIRPGWLEHQFSPRPISSQDFFQDGQNFLCSTLSHSRFVIDSLEEMSQRIVHSVRQMFQVGSISDFLSLEPQHRVIPLSLSVVILDNGMHAASEDSRQSFQSSRRNQRQRSRRNQSQRQTSRRNLRQSSRVNRMSEEAIINTFLKKCTVMRESEDCCICLEELNINAECYTMPCQHVFHLPCILTWLKTSSVCPLCRYSLPSTSQN* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00236 247 ProSiteProfiles Zinc finger RING-type profile. 197 238 IPR001841 -
Phac6g00236 247 Pfam Ring finger domain 196 238 IPR001841 -
Phac6g00236 247 SMART ring_2 197 237 IPR001841 -
Phac6g00236 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 244 IPR013083 -
Phac6g00236 247 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 128 240 IPR044675 -
Phac6g00236 247 MobiDBLite consensus disorder prediction 135 171 - -
Phac6g00236 247 SUPERFAMILY RING/U-box 188 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00236 Phac-Chr6 5564361 5565558 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00236 159 246 C3H Transcription Factor Family AT1G18760 34.066 7.86e-14 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00236 - - pvu:PHAVU_006G017700g 426.402