Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00223 ATGAGAAACAACTCCATAGTAGACTTCCCTCCTCAGAACTTCCTCTCTGCTAACTCAGATTCTGAATCCTTTAGGAAGCATCACATTGGATCATCCTCCCATATACCACGACCACCACCCACCACAAGGCTTGTCATTATCAAGGTGGCTTCAGGATGTGACATCATTGAGTCCATTTTTGACGTTGCTCGGAGAAACCAAACTAGCCTTGCCATCCAAAGTGTCTTTGGTACCATTGGCTCTGTGACCCTCCGTAACATCGGTCATGTTGTCCCTGCTATCGTGGCCTACGGGCCATTCAACATACTTTCTCTTACTGGTTGCTACTTTTATGACAATCAATATACCCTTTCTCCCGAAGCCACCCCTCCACCTTCTTTTTTCTTTGGGATTCACTTCTCTACCTTTTATGGTCGTGTCTTTTGTGGTAATGTTGGTGGTCGAGTCATTGCATATAAGGAAGTCATCTTGACCATTCTCACCTTCAAGAACCCTAGAATTATTAAATATGTTCCTGAAGGCGAAGAAAGCGATGATGAAGAAAATTACAATGAAAATTGTAGTGAGGATCCTATTAATTTTAATAATAACGGAGATGACTTGTCAACTTTCAACTCTAGTAATTGA 627 0.4195 MRNNSIVDFPPQNFLSANSDSESFRKHHIGSSSHIPRPPPTTRLVIIKVASGCDIIESIFDVARRNQTSLAIQSVFGTIGSVTLRNIGHVVPAIVAYGPFNILSLTGCYFYDNQYTLSPEATPPPSFFFGIHFSTFYGRVFCGNVGGRVIAYKEVILTILTFKNPRIIKYVPEGEESDDEENYNENCSEDPINFNNNGDDLSTFNSSN* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00223 208 Gene3D - 42 178 - -
Phac6g00223 208 Pfam Plants and Prokaryotes Conserved (PCC) domain 44 163 IPR005175 -
Phac6g00223 208 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 39 187 IPR014476 GO:0003680
Phac6g00223 208 ProSiteProfiles PPC domain profile profile. 38 189 IPR005175 -
Phac6g00223 208 CDD DUF296 43 160 IPR005175 -
Phac6g00223 208 MobiDBLite consensus disorder prediction 173 208 - -
Phac6g00223 208 SUPERFAMILY AF0104/ALDC/Ptd012-like 42 170 - -
Phac6g00223 208 MobiDBLite consensus disorder prediction 187 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00223 Phac-Chr6 4983499 4984125 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00223 32 191 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 26.471 4.28e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00223 - - pvu:PHAVU_006G007300g 368.622