Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00194 ATGGATCAATACCAAAAAAAGCTTTTCTTTCTTGTGTGTGACAAGTTTTTTTCCATTTCAACAATTGTGCATGCAGGTTTGAATGAGAGGAAGGAAACTCAGGGCTACAGTGAAGAGTTTCAAGCAATGTTAGACAGACTAGACCAAGAAGACAGCTATGAAGATTGTAGCTTAGTATTGGAGAAGAAAAGGAGGCTGAGTCTTGACCAGGTGAAGGCCTTAGAGAGAAACTTTGAACTGGACAACAAGCTAGAGCCAGAGCGCAAGTCCAAGCTTGCTCAACAACTAGGCCTTCAACCAAGACAAGTTGCTATTTGGTTCCAAAATCGTCGAGCTCGTTGGAAAACCAAGCAATTGGAGAGAGATTATGGCATTCTCAAGTCCAATTATGATGTTCTCAAGGTTGAGTACAATAATCTTGAGCAAGACAGTGAGGCTCTCACTGTTCAGGTAAGAGAATTGAAAGAAAAGTTGTTGAGAGGTAAAGCTGAAAACAATGAGTCAATAAAAGAAGAGTCTCCCATTTCAAAGGTAAGAGACGGAGTAGCATCAGAGAGCAATTCAAATGGTGTGGTTAAGGAAGAAAGCAACATTGATTCTGCTTTTTGTGTGAATGGATCTTTGTCCAGTTCAAGACCAGTACTTCAATACTCTGATTCAAGAGGGTCACCAGATAAAATTTTTCAGACTCAGTTTATGAGAATGGAGGAGCAGAATTTCTTTAGTATCAATGAGTTCTGTTTCTTTTCAGTTGATCAATCCCCTACCCTGTGA 774 0.3992 MDQYQKKLFFLVCDKFFSISTIVHAGLNERKETQGYSEEFQAMLDRLDQEDSYEDCSLVLEKKRRLSLDQVKALERNFELDNKLEPERKSKLAQQLGLQPRQVAIWFQNRRARWKTKQLERDYGILKSNYDVLKVEYNNLEQDSEALTVQVRELKEKLLRGKAENNESIKEESPISKVRDGVASESNSNGVVKEESNIDSAFCVNGSLSSSRPVLQYSDSRGSPDKIFQTQFMRMEEQNFFSINEFCFFSVDQSPTL* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00194 257 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 48 196 IPR045224 GO:0003700
Phac6g00194 257 SMART HOX_1 60 121 IPR001356 GO:0003677
Phac6g00194 257 Gene3D - 61 124 - -
Phac6g00194 257 PRINTS Lambda-repressor HTH signature 88 97 IPR000047 GO:0003677
Phac6g00194 257 PRINTS Lambda-repressor HTH signature 97 113 IPR000047 GO:0003677
Phac6g00194 257 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981|GO:0006355
Phac6g00194 257 Pfam Homeodomain 62 115 IPR001356 GO:0003677
Phac6g00194 257 SUPERFAMILY Homeodomain-like 62 129 IPR009057 -
Phac6g00194 257 MobiDBLite consensus disorder prediction 165 191 - -
Phac6g00194 257 FunFam homeobox-leucine zipper protein ATHB-6-like 65 111 - -
Phac6g00194 257 Pfam Homeobox associated leucine zipper 117 158 IPR003106 GO:0006355|GO:0043565
Phac6g00194 257 CDD homeodomain 62 118 IPR001356 GO:0003677
Phac6g00194 257 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677
Phac6g00194 257 Coils Coil 123 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00194 Phac-Chr6 4431888 4433715 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00194 27 166 Homeobox Transcription Factor Family AT5G65310 55.484 8.36e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phac6g00194 Homeodomain 3.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00194 K09338 - qsu:111985016 260.766