Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00150 ATGGCTTCCAGAAAATCCGACAACCCTCACTCCGGCGACGGCGCCAGTCCCGGGAAAATCTTCATCGGAGGGTTAGCCAAAGACACCACCCTAGAGACGTTTGTGAAGTACTTCGAGAAGTACGGCGAGATAACGGACTCGGTTATCATGAAAGACCGTCAAACGGGTCGACCCAGGGGCTTCGGGTTCATCACCTACGCGGATCCCTCCGTCGTTGATCAAGTCATTCAGGACAACCACATCATCAACGGCAAACAGGTTGAGATCAAGAGGACAATTCCCAAGGGTTCGTCGCAGGCTAATGACTTCAAAACCAAGAAGATCTTCGTCGGCGGTATTCCGACATCAGTATCCGAAGATGAGTTCAAGAACTTCTTCTCCAAGTATGGGAAGGTGGTAGAGCATGAGATTATACGGGACCACACCACAAAGCGGTCAAGGGGGTTTGGCTTTATAGTTTTTGATAGTGAAAAGGTTGTGGATAATATTTTGGAAGATGGGAGCATGATTGATATGGCTGGTACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAATCCTCAAACCCAGCTTCTCTTGCTCCGTTTGCTAGTGACTCTAGGGCACGTTCTTACAATGATGGATTCAGTGGATTTGGTGATTCTTATGGAAGTTTTGGCGGTAGCGGGTATGGTCCTGGTTCTTATAGGTCACTTGGTGGAGGGTTTGCGGGTAGGCTTGGCGATTATGGTGGGTATGGGGCTGGAGATGACTTTGGTGGTAGTTTTGGGGGTTATGGTGGCAGTGGTGCTGGTGGCTATGCTGGCTTTCGAGGAGAATCATCGTTTGGCTACTCTAGTCGCTACGGATCATACATGGGTGGCCTTGGTGCTGGTTATGGCAGCAGTGGGTTAGGTGCGTATGGACGAGGTGCTGGGGGCTATGGGAGCTATGGTGGTCCAGGCACTGGTGGGGGTTATGAATCAGGCCCAGGTGCTGGTTATGGTGGAGCTGGAGGTGGAGTGTATCCCAGTAGGGGAAGCTATGGTGGCAGTAGTCGTTACCATCCTTACACAAGATAG 1062 0.5066 MASRKSDNPHSGDGASPGKIFIGGLAKDTTLETFVKYFEKYGEITDSVIMKDRQTGRPRGFGFITYADPSVVDQVIQDNHIINGKQVEIKRTIPKGSSQANDFKTKKIFVGGIPTSVSEDEFKNFFSKYGKVVEHEIIRDHTTKRSRGFGFIVFDSEKVVDNILEDGSMIDMAGTQVEIKKAEPKKSSNPASLAPFASDSRARSYNDGFSGFGDSYGSFGGSGYGPGSYRSLGGGFAGRLGDYGGYGAGDDFGGSFGGYGGSGAGGYAGFRGESSFGYSSRYGSYMGGLGAGYGSSGLGAYGRGAGGYGSYGGPGTGGGYESGPGAGYGGAGGGVYPSRGSYGGSSRYHPYTR* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00150 353 Gene3D - 18 98 IPR012677 -
Phac6g00150 353 Gene3D - 99 193 IPR012677 -
Phac6g00150 353 SUPERFAMILY RNA-binding domain, RBD 9 98 IPR035979 GO:0003676
Phac6g00150 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 168 IPR000504 GO:0003723
Phac6g00150 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 87 IPR000504 GO:0003723
Phac6g00150 353 FunFam Heterogeneous nuclear ribonucleoprotein 1 99 224 - -
Phac6g00150 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Phac6g00150 353 SMART rrm1_1 19 90 IPR000504 GO:0003723
Phac6g00150 353 SMART rrm1_1 107 180 IPR000504 GO:0003723
Phac6g00150 353 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 7 353 - -
Phac6g00150 353 FunFam Heterogeneous nuclear ribonucleoprotein 1 17 98 - -
Phac6g00150 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Phac6g00150 353 SUPERFAMILY RNA-binding domain, RBD 94 190 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00150 Phac-Chr6 1662025 1666267 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00150 4 170 Eukaryotic Initiation Factors Gene Family AT1G71770 27.807 1.13e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00150 K12741 - gmx:100801373 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac6g00150 6 1662025 1666267 Phac6g00150 6 1662025 1666267 ECH
Phac6g00150 6 1662025 1666267 Phac8g03856 8 44352942 44357898 PCT