Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00144 ATGTGTCATAATTCAGCTTCCGCATCTTCAGACAGGGAGAACTTCTGTTTTTTCAGAGTATATCTTGGTCTGTTAAGACTGTTACTAGGTGGAGATTCCTTGATTTATTCCAAGGGGCAAGAGAAAAAAAGTGTAAAGATGGGTTATATATGTGATTTTTGTGGAGACCAGAGATCCATGGTGTACTGCCGCTCTGATGCTGCCTACTTATGTTTGTCTTGTGATCGGAATGTTCATTCGGCTAATGCCCTTTCCAGGCGCCATTCACGCACCCTTTTGTGTGAGAGATGCAATTCACAACCTGCCTTTGTGAGGTGTGTTGAAGAGAAAATTTCACTGTGTCAGAATTGTGATTGGTTGGGTCATGGAGTCTCTACATCTTCAACACATAAGAGACAAGCAATCAGTTGCTACTCTGGCTGCCCTTCAGCGGCGGAACTGTCTTCAATATGGTCCTTTGTGCTGGATATCCCTTCCATTAGAGAGTCTACATGTGAGCAAGAACTAGGCTTAATGAGTATTAATGAGAACAACAAGAGTGTTGGAGTTCTACCTGAAAATGGGAATGTGTCTGGTTCAGATCAAGTTACTGATCTACCTTCTTTGGACAAGTCTTTGGTTGGTACATCTTCAGTACCCGAGTCAAGCTCCAAACCTCCAGCTGGACCTGCCAATGAATGTCTGCCAAAGTTGTACTGTCCTGCTGCAAAATGCCCTGCATTATGTGAAGATGATAATCTATATGATGATTTTGACATGGATGAAATGGATCTAAATCTTGAGAACTACGAAGAACTTTTTGGTGTGGCCCTCAGTCATTCCGAAGAGCTATTTGAAAATGGTGGATTTAATAGTTTGTTTGGGACAAAAGACATGTCTGCAGGAGATTCCAGTTGTCAGGATGCCATTGCTGCCGAGGGGTCATCGGTTGGACTGGTCAATGCAACACAACCGGCTTGCAGCAACGCAGCATCTGCAGATTCCATTTTGAGTACTAAAACCGAACCGATTCTTTGTTTGACGGGGAGGCAAGCTCAATCAAACCTTTCTTTTTCTGGCATTACCGGAGAGAGTAGTGCTGCAGACTATCAAGACTGTGGGGCTTCTTCCATGCTTCTCAGGGGAGAACCTCCTTGGTTTGCTCCTTGTCCTGAGAATTCCTTACAATCTGCCAACCGCAGCAATGCTGTCTTGCGCTACAAGGAAAAGAAGAAGGCGCGAAAGTTCGAAAAACAAGTGCGGTATGCCTCTCGCAAGGCAAGGGCCGATGTCAGAAGGCGGGTGAAGGGCCGGTTTGTGAAAGCCGGTGACGTCTACGATTATGACCCTTTGAGCACAACCAGAAGCTACTGA 1353 0.4523 MCHNSASASSDRENFCFFRVYLGLLRLLLGGDSLIYSKGQEKKSVKMGYICDFCGDQRSMVYCRSDAAYLCLSCDRNVHSANALSRRHSRTLLCERCNSQPAFVRCVEEKISLCQNCDWLGHGVSTSSTHKRQAISCYSGCPSAAELSSIWSFVLDIPSIRESTCEQELGLMSINENNKSVGVLPENGNVSGSDQVTDLPSLDKSLVGTSSVPESSSKPPAGPANECLPKLYCPAAKCPALCEDDNLYDDFDMDEMDLNLENYEELFGVALSHSEELFENGGFNSLFGTKDMSAGDSSCQDAIAAEGSSVGLVNATQPACSNAASADSILSTKTEPILCLTGRQAQSNLSFSGITGESSAADYQDCGASSMLLRGEPPWFAPCPENSLQSANRSNAVLRYKEKKKARKFEKQVRYASRKARADVRRRVKGRFVKAGDVYDYDPLSTTRSY* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00144 450 ProSiteProfiles Zinc finger B-box type profile. 89 135 IPR000315 GO:0008270
Phac6g00144 450 ProSiteProfiles CCT domain profile. 393 435 IPR010402 GO:0005515
Phac6g00144 450 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 48 437 - -
Phac6g00144 450 SMART bboxneu5 94 135 IPR000315 GO:0008270
Phac6g00144 450 SMART bboxneu5 46 93 IPR000315 GO:0008270
Phac6g00144 450 CDD Bbox1_BBX-like 93 135 - -
Phac6g00144 450 MobiDBLite consensus disorder prediction 183 222 - -
Phac6g00144 450 Pfam CCT motif 393 435 IPR010402 GO:0005515
Phac6g00144 450 MobiDBLite consensus disorder prediction 183 218 - -
Phac6g00144 450 CDD Bbox1_BBX-like 50 93 - -
Phac6g00144 450 ProSiteProfiles Zinc finger B-box type profile. 46 93 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00144 Phac-Chr6 1636780 1642307 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00144 47 450 C2C2-CO-like Transcription Factor Family AT3G07650 56.220 3.98e-154 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Phac6g00144 CCT 2.2e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00144 - - pvu:PHAVU_006G005200g 879.396