Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00142 ATGGGGCTGTCAAGTCTCCCAGAACCGTCTGAAGGAATGCTATGTGTGCTTCTTGTAAACACTGCCTTGTCCATATCCCTATTCAAGGGCATTGTCAGGACAATTCTTCACATTGTTGGTATCCGTGTTGCATCATCTCCTTCACAAGACATCTCCCAAAGCCTTTCTGAGCCATCAGAGAGTCTCATTGAAGAGTTCAGAAGCAGGATACCAACCCTGAGGTTTGGCACCATGTGTGGCGGCAAACAACCTCAACATGAATGTTGTGTGTGTCTCACAAGGTTTAAGCCAGAATCTGAGATAAACCGTTTACCCTGTGGCCATCTTTTCCATAAGGTGTGCTTGGAGAAGTGGTTGGACTATTGGAACACTACATGCCCACTTTGCAGGACTCCCTTGATGCCTGAAGATGACACATCTTGCTTTTAG 429 0.4639 MGLSSLPEPSEGMLCVLLVNTALSISLFKGIVRTILHIVGIRVASSPSQDISQSLSEPSESLIEEFRSRIPTLRFGTMCGGKQPQHECCVCLTRFKPESEINRLPCGHLFHKVCLEKWLDYWNTTCPLCRTPLMPEDDTSCF* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00142 142 SMART ring_2 88 129 IPR001841 -
Phac6g00142 142 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Phac6g00142 142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 135 IPR013083 -
Phac6g00142 142 PANTHER - 1 138 IPR044249 -
Phac6g00142 142 Pfam Ring finger domain 87 130 IPR001841 -
Phac6g00142 142 SUPERFAMILY RING/U-box 87 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00142 Phac-Chr6 1621722 1623727 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00142 1 137 C3H Transcription Factor Family AT2G04240 59.740 2.34e-53 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00142 K16285 - gmx:100306440 232.646