Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00116 ATGGGTCGCTGCCGTGCGGCGTCGGCGTCGGGCCCCGCCGACGATGACCCCAACCTCAGATTAAAGAGAAAAAAGGCTGCTCTGAGCACCGAAAATTCAGAAACTTTACCTACAGGCCAAGGAATAGCTAATAGCAAGGTATCTCTTTATCACTGTAATTATTGCAACAAAGATATTTCGGGGAGGATTCGCATCAAATGTGCTGTGTGTCAAGATTTTGACCTCTGCATAGAGTGCTTTTCTGTTGGTGCTGAGGTGACACCCCACAAATGCAATCATCCGTATCGGATTATGGATAATCTATCTTTTCCACTTATATGTCCAGATTGGAATGCAGATGAAGAGATGTTACTTCTAGAGGCCATTGAGATGTATGGATTCGGGAATTGGAATGAAGTTGCAGAATATGTTGGAACAAAAAGCAAATCTCAATGTATTGACCACTATAATGCTGTATATATGAATTCACCATGTTTTCCTCTCCCGGATTTGTCTCATGTTATGGGAAAGAGCAGAGACGAACTCTTTGCCATGGTTAAGGGACATGAAGCCAAAAAAGTGCACCTAAAGATTCACCACCGCCACCAACTCTTCAGGTGTATAGTCGTCGTCAAACGTCTCATCGTCCATCAGATGACTCTCTTCTAG 648 0.4383 MGRCRAASASGPADDDPNLRLKRKKAALSTENSETLPTGQGIANSKVSLYHCNYCNKDISGRIRIKCAVCQDFDLCIECFSVGAEVTPHKCNHPYRIMDNLSFPLICPDWNADEEMLLLEAIEMYGFGNWNEVAEYVGTKSKSQCIDHYNAVYMNSPCFPLPDLSHVMGKSRDELFAMVKGHEAKKVHLKIHHRHQLFRCIVVVKRLIVHQMTLF* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00116 215 ProSiteProfiles Myb-like domain profile. 110 153 IPR001005 -
Phac6g00116 215 SMART sant 106 155 IPR001005 -
Phac6g00116 215 FunFam Transcriptional adapter 2 103 155 - -
Phac6g00116 215 MobiDBLite consensus disorder prediction 1 20 - -
Phac6g00116 215 CDD ZZ_ADA2 50 98 IPR041983 -
Phac6g00116 215 SMART zz_5 46 91 IPR000433 GO:0008270
Phac6g00116 215 CDD SANT 110 150 IPR001005 -
Phac6g00116 215 Gene3D - 104 155 - -
Phac6g00116 215 ProSiteProfiles SANT domain profile. 105 157 IPR017884 -
Phac6g00116 215 FunFam Transcriptional adapter 43 98 - -
Phac6g00116 215 ProSiteProfiles Zinc finger ZZ-type profile. 47 103 IPR000433 GO:0008270
Phac6g00116 215 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 49 184 - -
Phac6g00116 215 Pfam Zinc finger, ZZ type 50 88 IPR000433 GO:0008270
Phac6g00116 215 Pfam Myb-like DNA-binding domain 109 150 IPR001005 -
Phac6g00116 215 ProSitePatterns Zinc finger ZZ-type signature. 52 79 IPR000433 GO:0008270
Phac6g00116 215 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 110 157 IPR017930 -
Phac6g00116 215 Gene3D - 43 98 IPR043145 -
Phac6g00116 215 SUPERFAMILY Homeodomain-like 102 156 IPR009057 -
Phac6g00116 215 SUPERFAMILY RING/U-box 50 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00116 Phac-Chr6 1398747 1404967 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00116 1 185 EF-hand Containing Proteins AT3G07740 57.216 5.52e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phac6g00116 Myb_DNA-binding 3.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00116 K11314 - pvu:PHAVU_006G004000g 385.185