Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00099 ATGGACAAGGCAGCTGCTGAACTTCAACGTGAGGCAGCAGATCCTGCTATTCTTCTTCACCGCCATCAGTGTTCTGCTGGAAATGGGATAGGTGACAGTACCTCCTTGATTCCAGAATCCAGAAGACCTCACCTCTCCTCTCTGCAAATACCAGCAAGGTCAGTGGAAAATGCATTATCCTCTTTCACAAAGACAGATGGTCCTACATTGATATCAAGTCCAGGTTCCGGTAGAGGACTTCCCCCAAGGCCAAATTCAGCCAGAGTCAAGTCCACTATGAAAAGTTTGCTCTCTGAGAGGAGCTTTAAGGCTAAGAATGGTTCACAAGATAGTGAAAGGACAGTTCTTATTGTTCCTGATAACTTACCATCAGATTGTCCTGTGGATAAGCCTTCAACTTCTAAGCCTTCAACCTCTAAGCCTTCAACTTCAAGGTCCCTTTCTCTTAACAAGATTTTGTTCTCTTCATCAACCAAAGCCACACATTCATTGCCTGTTACTCCAACTGCAAATTCAGGTGCAGAGATTGTACAAGGAAGACATCTAGGGTGTGATTCTGATTCAAGTAAAATGGAAGTAAATCAGCACATTACTCGATCGGTTTCGGTTCCTGTTAATATCAAAGCCGCTAATTTAAGACGTACAGATTCTAGAAGGTTGGTTCGTGTAATTTCAGCAAGATCACTTCTAACAACTGGTGAAGGCATCTCAACTCAGAATGCTTCCGGATCTGAGATTGTTGTTGAAGATACTTCTGAGGATATTCCAGAGGAAGATGCAGTTTGTAGGATTTGCTTGGTGGAGCTTGCGGAAGGAGGTAATACTCTGAGGATGGAATGCAGTTGTAAAGGTGAGCTCGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAACAAAACCTGTGATGTCTGCAAGCAGGAAGTCCTTAACCTCCCCGTAACACTCTTGAAAATTTCTAATCCTCAAACTGTTATTCCGCAGCCATTACCAGCACCACAGCAAAGAGAAGTAACTTCTTACAGGATATGGCAGGATTTATCAGTACTTATCTTGGTCAGCATGCTTGCATACTTTTGTTTTCTTGAGGAGCTACTGGTTTCAGATTTGGGAACTCATGCTCTTGCTATTTCATTGCCTTTCTCCTGTGTTTTAGGACTCCTTTCATCTATGATTGCTTCAACCATGGTGAACGGGAGTTACATGTGGGCCTATGCTTGCTTCCAGTTTGCAATTGTCATCCTGTTTGCTCATGTATTTTATACCATACTTGAATACTCTGGTAACGGAATATGTCAGATGGAGAATGAGAAGACTGATTCAATCTTCTACGACACAACAACTGCGTCGTGA 1365 0.4278 MDKAAAELQREAADPAILLHRHQCSAGNGIGDSTSLIPESRRPHLSSLQIPARSVENALSSFTKTDGPTLISSPGSGRGLPPRPNSARVKSTMKSLLSERSFKAKNGSQDSERTVLIVPDNLPSDCPVDKPSTSKPSTSKPSTSRSLSLNKILFSSSTKATHSLPVTPTANSGAEIVQGRHLGCDSDSSKMEVNQHITRSVSVPVNIKAANLRRTDSRRLVRVISARSLLTTGEGISTQNASGSEIVVEDTSEDIPEEDAVCRICLVELAEGGNTLRMECSCKGELALAHQDCAVKWFSIKGNKTCDVCKQEVLNLPVTLLKISNPQTVIPQPLPAPQQREVTSYRIWQDLSVLILVSMLAYFCFLEELLVSDLGTHALAISLPFSCVLGLLSSMIASTMVNGSYMWAYACFQFAIVILFAHVFYTILEYSGNGICQMENEKTDSIFYDTTTAS* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00099 454 SMART ringv_2 261 310 IPR011016 GO:0008270
Phac6g00099 454 MobiDBLite consensus disorder prediction 88 115 - -
Phac6g00099 454 Pfam RING-variant domain 262 309 IPR011016 GO:0008270
Phac6g00099 454 ProSiteProfiles Zinc finger RING-CH-type profile. 254 316 IPR011016 GO:0008270
Phac6g00099 454 MobiDBLite consensus disorder prediction 127 146 - -
Phac6g00099 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 317 IPR013083 -
Phac6g00099 454 CDD RING_CH-C4HC3_MARCH 262 310 - -
Phac6g00099 454 MobiDBLite consensus disorder prediction 28 42 - -
Phac6g00099 454 PANTHER OS02G0165000 PROTEIN 37 429 - -
Phac6g00099 454 MobiDBLite consensus disorder prediction 62 146 - -
Phac6g00099 454 MobiDBLite consensus disorder prediction 28 48 - -
Phac6g00099 454 SUPERFAMILY RING/U-box 258 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00099 Phac-Chr6 1015330 1022580 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00099 256 316 C3H Transcription Factor Family AT2G37950 46.774 6.65e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00099 - - pvu:PHAVU_006G002500g 815.068