Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00094 ATGAAAAGTTTGCTCTCTGAGAGGAGCTTTAAGGCTAAGAATGGTTCACAAGATAGTGAAAGGACAGTTCTTATTGTTCCTGATAACTTACCATCAGATTGTCCTGTGGATAAGCCTTCAACTTCTAAGCCTTCAACCTCTAAGCCTTCAACTTCAAGGTCCCTTTCTCTTAACAAGATTTTGTTCTCTTCATCAACCAAAGCCACACATTCATTGCCTGTTACTCCAACTGCAAATTCAGGTGCAGAGATTGTACAAGGAAGACATCTAGGGTGTGATTCTGATTCAAGTAAAATGGAAGTAAATCAGCACATTACTCGATCGGTTTCGGTTCCTGTTAATATCAAAGCCGCTAATTTAAGACGTACAGATTCTAGAAGGTTGGTTCGTGTAATTTCAGCAAGATCACTTCTAACAACTGGTGAAGGCATCTCAACTCAGAATGCTTCCGGATCTGAGATTGTTGTTGAAGATACTTCTGAGGATATTCCAGAGGAAGATGCAGTTTGTAGGATTTGCTTGGTGGAGCTTGCGGAAGGAGGTAATACTCTGAGGATGGAATGCAGTTGTAAAGGTGAGCTCGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAACAAAACCTGTGATGTCTGCAAGCAGGAAGTCCTTAACCTCCCCGTAACACTCTTGAAAATTTCTAATCCTCAAACTGTTATTCCGCAGCCATTACCAGCACCACAGCAAAGAGAAGTAACTTCTTACAGGATATGGCAGGATTTATCAGTACTTATCTTGGTCAGCATGCTTGCATACTTTTGTTTTCTTGAGGAGCTACTGGTTTCAGATTTGGGAACTCATGCTCTTGCTATTTCATTGCCTTTCTCCTGTGTTTTAGGACTCCTTTCATCTATGATTGCTTCAACCATGGTGAACGGGAGTTACATGTGGGCCTATGCTTGCTTCCAGTTTGCAATTGTCATCCTGTTTGCTCATGTATTTTATACCATACTTAATGTTAATGCCATTCTCTCAGTTCTTCTCTCCTCATTCACTGGATTTGGGATTTCAATCAGCTTGAATACTCTGGTAACGGAATATGTCAGATGGAGAATGAGAAGACTGATTCAATCTTCTACGACACAACAACTGCGTCGTGATCATGCACACCAGCAGCAAGAACATCAAAGACTGCATCCTCAACTGCAAAGGCCGCAGCAAGAGCAGCACCAATGA 1230 0.4179 MKSLLSERSFKAKNGSQDSERTVLIVPDNLPSDCPVDKPSTSKPSTSKPSTSRSLSLNKILFSSSTKATHSLPVTPTANSGAEIVQGRHLGCDSDSSKMEVNQHITRSVSVPVNIKAANLRRTDSRRLVRVISARSLLTTGEGISTQNASGSEIVVEDTSEDIPEEDAVCRICLVELAEGGNTLRMECSCKGELALAHQDCAVKWFSIKGNKTCDVCKQEVLNLPVTLLKISNPQTVIPQPLPAPQQREVTSYRIWQDLSVLILVSMLAYFCFLEELLVSDLGTHALAISLPFSCVLGLLSSMIASTMVNGSYMWAYACFQFAIVILFAHVFYTILNVNAILSVLLSSFTGFGISISLNTLVTEYVRWRMRRLIQSSTTQQLRRDHAHQQQEHQRLHPQLQRPQQEQHQ* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00094 409 Pfam RING-variant domain 170 217 IPR011016 GO:0008270
Phac6g00094 409 SMART ringv_2 169 218 IPR011016 GO:0008270
Phac6g00094 409 SUPERFAMILY RING/U-box 166 221 - -
Phac6g00094 409 MobiDBLite consensus disorder prediction 35 54 - -
Phac6g00094 409 PANTHER OS02G0165000 PROTEIN 1 387 - -
Phac6g00094 409 MobiDBLite consensus disorder prediction 1 54 - -
Phac6g00094 409 ProSiteProfiles Zinc finger RING-CH-type profile. 162 224 IPR011016 GO:0008270
Phac6g00094 409 MobiDBLite consensus disorder prediction 384 409 - -
Phac6g00094 409 MobiDBLite consensus disorder prediction 1 23 - -
Phac6g00094 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 225 IPR013083 -
Phac6g00094 409 CDD RING_CH-C4HC3_MARCH 170 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00094 Phac-Chr6 1015330 1022580 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00094 164 224 C3H Transcription Factor Family AT2G37950 46.774 5.09e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00094 - - pvu:PHAVU_006G002500g 748.814