Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00092 ATGGTGAAAACTGAAACCCCTTTTACCTGTGCCATGATTTCTCTTCATACCATCTGGGTTCCATTTGGTTTGAGCTATATAGGGACCAAGATAAAGCAAAGTTCAATTTTTACCATATGGTGTTCTGCTGGAAATGGGATAGGTGACAGTACCTCCTTGATTCCAGAATCCAGAAGACCTCACCTCTCCTCTCTGCAAATACCAGCAAGGTCAGTGGAAAATGCATTATCCTCTTTCACAAAGACAGATGGTCCTACATTGATATCAAGTCCAGGTTCCGGTAGAGGACTTCCCCCAAGGCCAAATTCAGCCAGAGTCAAGTCCACTATGAAAAGTTTGCTCTCTGAGAGGAGCTTTAAGGCTAAGAATGGTTCACAAGATAGTGAAAGGACAGTTCTTATTGTTCCTGATAACTTACCATCAGATTGTCCTGTGGATAAGCCTTCAACTTCTAAGCCTTCAACCTCTAAGCCTTCAACTTCAAGGTCCCTTTCTCTTAACAAGATTTTGTTCTCTTCATCAACCAAAGCCACACATTCATTGCCTGTTACTCCAACTGCAAATTCAGGTGCAGAGATTGTACAAGGAAGACATCTAGGGTGTGATTCTGATTCAAGTAAAATGGAAGTAAATCAGCACATTACTCGATCGGTTTCGGTTCCTGTTAATATCAAAGCCGCTAATTTAAGACGTACAGATTCTAGAAGGTTGGTTCGTGTAATTTCAGCAAGATCACTTCTAACAACTGGTGAAGGCATCTCAACTCAGAATGCTTCCGGATCTGAGATTGTTGTTGAAGATACTTCTGAGGATATTCCAGAGGAAGATGCAGTTTGTAGGATTTGCTTGGTGGAGCTTGCGGAAGGAGGTAATACTCTGAGGATGGAATGCAGTTGTAAAGGTGAGCTCGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAACAAAACCTGTGATGTCTGCAAGCAGGAAGTCCTTAACCTCCCCGTAACACTCTTGAAAATTTCTAATCCTCAAACTGTTATTCCGCAGCCATTACCAGCACCACAGCAAAGAGAAGTAACTTCTTACAGGATATGGCAGGATTTATCAGTACTTATCTTGGTCAGCATGCTTGCATACTTTTGTTTTCTTGAGGAGCTACTGGTTTCAGATTTGGGAACTCATGCTCTTGCTATTTCATTGCCTTTCTCCTGTGTTTTAGGACTCCTTTCATCTATGATTGCTTCAACCATGGTGAACGGGAGTTACATGTGGGCCTATGCTTGCTTCCAGTTTGCAATTGTCATCCTGTTTGCTCATGTATTTTATACCATACTTAATGTTAATGCCATTCTCTCAGTTCTTCTCTCCTCATTCACTGGATTTGGGATTTCAATCAGCTTGAATACTCTGGTAACGGAATATGTCAGATGGAGAATGAGAAGACTGATTCAATCTTCTACGACACAACAACTGCGTCGTGATCATGCACACCAGCAGCAAGAACATCAAAGACTGCATCCTCAACTGCAAAGGCCGCAGCAAGAGCAGCACCAATGA 1557 0.4226 MVKTETPFTCAMISLHTIWVPFGLSYIGTKIKQSSIFTIWCSAGNGIGDSTSLIPESRRPHLSSLQIPARSVENALSSFTKTDGPTLISSPGSGRGLPPRPNSARVKSTMKSLLSERSFKAKNGSQDSERTVLIVPDNLPSDCPVDKPSTSKPSTSKPSTSRSLSLNKILFSSSTKATHSLPVTPTANSGAEIVQGRHLGCDSDSSKMEVNQHITRSVSVPVNIKAANLRRTDSRRLVRVISARSLLTTGEGISTQNASGSEIVVEDTSEDIPEEDAVCRICLVELAEGGNTLRMECSCKGELALAHQDCAVKWFSIKGNKTCDVCKQEVLNLPVTLLKISNPQTVIPQPLPAPQQREVTSYRIWQDLSVLILVSMLAYFCFLEELLVSDLGTHALAISLPFSCVLGLLSSMIASTMVNGSYMWAYACFQFAIVILFAHVFYTILNVNAILSVLLSSFTGFGISISLNTLVTEYVRWRMRRLIQSSTTQQLRRDHAHQQQEHQRLHPQLQRPQQEQHQ* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00092 518 ProSiteProfiles Zinc finger RING-CH-type profile. 271 333 IPR011016 GO:0008270
Phac6g00092 518 MobiDBLite consensus disorder prediction 144 163 - -
Phac6g00092 518 CDD RING_CH-C4HC3_MARCH 279 327 - -
Phac6g00092 518 MobiDBLite consensus disorder prediction 79 163 - -
Phac6g00092 518 PANTHER OS02G0165000 PROTEIN 54 495 - -
Phac6g00092 518 SUPERFAMILY RING/U-box 275 330 - -
Phac6g00092 518 MobiDBLite consensus disorder prediction 493 518 - -
Phac6g00092 518 Pfam RING-variant domain 279 326 IPR011016 GO:0008270
Phac6g00092 518 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 334 IPR013083 -
Phac6g00092 518 SMART ringv_2 278 327 IPR011016 GO:0008270
Phac6g00092 518 MobiDBLite consensus disorder prediction 105 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00092 Phac-Chr6 1015330 1022580 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00092 273 333 C3H Transcription Factor Family AT2G37950 46.774 8.16e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00092 - - pvu:PHAVU_006G002500g 880.937