Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00065 ATGGATTCCAGTGCCAGACAAAGCTTGAAACGCAAGTTAGCGGAAGAGGTGAAGGATTCTCACTGCAAGCGAATTCGCCCAGCTTTCACTTCCATTATTATTAAGATTCTCTTTCTCCTTAACTCTTTCGATCAAGTTCTTCTCAACAAACTTATTACCATTCTTGTCAAACTCTGCAAAACCACGAAGCATGAAATCCATGAGGATTTTATTAATATTTTGGTCAAGAACGGTGCTATCCATGCTCTGGTGAGGATACTTCATCTACCAGACAAGGTTGTGGAAGATTGCAGTGACAGACTTATCCAAGCTCGTCTCCTCCAACTGAAAAAAGGGTGCGCGTTCATCCTTGGAACTCTTGCCAGAAAGCTGGTTTATCAACAAATTATCATAGATGCTGGAGCCTTCTTGTGTCTTCTGCGCTTGTTAAAGAGCCACAAGACGATTCCCAAATCTCTATCAGTTGCTGGTTTTCTGAGGAGAGTGGTTGATGCAATATCTAACCTTGCTTACAAAAATAACAAAGTTAACATGCTTATCAGAAAGGAAGATGGCATCGCTCCTCTGATTGAATTGCTCGAATTCAAGGTGAAAAAGGTGCAGGTCGCGGTTACAACGGCCTTAGGAACATTGGCATTTAATAGTGTTCACACTGTAACTAAGTTGGTTCAATGCAACGCATTACCCAGTCTTGTACTAATGCTTCAATCAGAGGATTATGTAACACAATTCACCGCGGTGCAACTGATTAAAATAATGCTAGACACTTCACCGCGTATTGGAAGAGCAGTTCTTGGCGCTGGAGCTTTAACACCTGTTATCTGTTTACTCAGTTCCTCCTTTTCGGAGAGCCAAGGATTAGCAGCCCTTCTACTTGGTCACTTTCTCGCGACTGATTCTGATTTGAAGGTTCATATTTCCCAAAGAGGGGCTATTCCACCATTAGTTAACATGCTTCAGTCCGAAAATACTAAGCTTAGGAAAGCATCGGCTTTTGTACTTGAGACATTAGCACAGGACTCACATAATCAAGTTAGTATTGCTCATAGTGGAGGTATAGAGCCTATGCTCAATCTTTTGCAATCGGACAATCCAACAGTTCAACAATATGCTGCTCGTGCTCTCTATTCTCTTGCTGATAATGAGGACATTGTTGCAAACATTATTAAAGTTGGCGGGTTTGAAAAGCTAAAGGATTTACGTTTCTCCGAGGATCCTATCATCAGAGAGTTTGTAGCAATCACGTTGTTAAGATTAGAACGAAACATGCGAGGGCGAACATTGAAATACCTAATCCATCTTATGTGCTCTGCGGAAGAAGAGGTTAGAAGACATGTAGTTATTGCTCTTGCTCATTTATGTTCTCCTCCAGATCATGAAACTGTATTCATTCAAAATGAAGGATTACAGTTGCTGCTGAATATTCTTCAATCTCAATGCACAATACAGAAGCGCAAGGCTTCAATGGCACTTAGCATGTTGGCTAGTAGAGCCAATTTCATTTCCTCTCTCATTCAGACTATTTCTCCATCACCAGCTTCCCAGATGGACTTGGGCGAGGAATTTATCAACAATCCAATGCTTTCTGATATCACATTCCTGGTTGAAGGAAAATTATTTTATGCTCATAAAGATCGTTTAGTTTCTTCAAGTGTATTTCAGGCCATGTTTGAGGCAGAGTGTTTTGAAAAGGAAACCAAACAAGCAGTGATTCCAAATATTAAATGGGATGTCTTTCAATTAATGATGAGATTTATATACACTGGAACAGTAGATGTCAAATTGGATAACGCTGAAGACCTTCTAAGAGCTGCAGATCAATATCTTCTTCAAGACCTTAAGCTTATTTGTGAACGTGTTATTGCTAAAAGTATTTCACCAAAAAATGTTTCGCAATTGTTGGAGCTCTCAGAAGATTTCAGTGCTAATACATTGAAAAATGCATGCATACTGTATATGCTAGAGAAGTTTGATAACTTGCATTCAAAACGATGGTATTATACCACGCTTCATCGCATTGTACCAGACATAGATACTCTCTTCTCAACTTTACTTATTATGGATCAAAGCAATGAAGATGCTTCTGTTGCATACTTGTTTCAATAG 2106 0.396 MDSSARQSLKRKLAEEVKDSHCKRIRPAFTSIIIKILFLLNSFDQVLLNKLITILVKLCKTTKHEIHEDFINILVKNGAIHALVRILHLPDKVVEDCSDRLIQARLLQLKKGCAFILGTLARKLVYQQIIIDAGAFLCLLRLLKSHKTIPKSLSVAGFLRRVVDAISNLAYKNNKVNMLIRKEDGIAPLIELLEFKVKKVQVAVTTALGTLAFNSVHTVTKLVQCNALPSLVLMLQSEDYVTQFTAVQLIKIMLDTSPRIGRAVLGAGALTPVICLLSSSFSESQGLAALLLGHFLATDSDLKVHISQRGAIPPLVNMLQSENTKLRKASAFVLETLAQDSHNQVSIAHSGGIEPMLNLLQSDNPTVQQYAARALYSLADNEDIVANIIKVGGFEKLKDLRFSEDPIIREFVAITLLRLERNMRGRTLKYLIHLMCSAEEEVRRHVVIALAHLCSPPDHETVFIQNEGLQLLLNILQSQCTIQKRKASMALSMLASRANFISSLIQTISPSPASQMDLGEEFINNPMLSDITFLVEGKLFYAHKDRLVSSSVFQAMFEAECFEKETKQAVIPNIKWDVFQLMMRFIYTGTVDVKLDNAEDLLRAADQYLLQDLKLICERVIAKSISPKNVSQLLELSEDFSANTLKNACILYMLEKFDNLHSKRWYYTTLHRIVPDIDTLFSTLLIMDQSNEDASVAYLFQ* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00065 701 Gene3D - 262 423 IPR011989 -
Phac6g00065 701 Pfam Armadillo/beta-catenin-like repeat 340 379 IPR000225 GO:0005515
Phac6g00065 701 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 351 393 IPR000225 GO:0005515
Phac6g00065 701 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 4 687 IPR044282 -
Phac6g00065 701 SUPERFAMILY POZ domain 514 623 IPR011333 -
Phac6g00065 701 SUPERFAMILY ARM repeat 427 498 IPR016024 -
Phac6g00065 701 Gene3D - 424 517 IPR011989 -
Phac6g00065 701 Gene3D - 30 261 IPR011989 -
Phac6g00065 701 SMART BTB_4 529 625 IPR000210 GO:0005515
Phac6g00065 701 Gene3D Potassium Channel Kv1.1; Chain A 519 663 IPR011333 -
Phac6g00065 701 ProSiteProfiles BTB domain profile. 529 595 IPR000210 GO:0005515
Phac6g00065 701 Pfam BTB/POZ domain 522 623 IPR000210 GO:0005515
Phac6g00065 701 SMART arm_5 340 380 IPR000225 GO:0005515
Phac6g00065 701 SMART arm_5 123 171 IPR000225 GO:0005515
Phac6g00065 701 SMART arm_5 215 255 IPR000225 GO:0005515
Phac6g00065 701 SMART arm_5 67 122 IPR000225 GO:0005515
Phac6g00065 701 SMART arm_5 173 213 IPR000225 GO:0005515
Phac6g00065 701 SMART arm_5 455 496 IPR000225 GO:0005515
Phac6g00065 701 SMART arm_5 299 339 IPR000225 GO:0005515
Phac6g00065 701 SUPERFAMILY ARM repeat 39 416 IPR016024 -
Phac6g00065 701 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 310 352 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00065 Phac-Chr6 770958 775149 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00065 231 505 U-box Gene Family AT2G23140 25.357 2.96e-12 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Phac6g00065 BTB 8.6e-21 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00065 - - gmx:100783124 622.854