Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00055 ATGAGTATTCCACAAGCTGCTGCTGCTGCTGCTGCAACTAGTCCTCCTCCACATCTCTATCCACAGGAGCTACAGCTTAAGCTTTACCAAGCCTTCATATTCTCAATTCCTATACTCTTCTCCATCATTCTCTTTCTCTTGTTTTACTTGTTCTACCTCAAGAGAAGGGCTTCCTCTCTCTCTTCCTCTTCTCCTCACTTGCTTCCGAGGAACATTGCCAATCCACCAACCACCACTCCCTATCATTCATCACCTTGTCGATTGGATCTGACCCTTCAATTCCTGGATAAGCTTCCAAGGATTTTATTTGATGAGGATTTGCTAGCAAGAGATTCACCGTGTTGTGTTTGTCTGGGGGAGTTTGAGGTGAAGGAAGAGGTGGTGCAGATTCCTTATTGCAAGCACGTGTTCCACTTAGATTGTATACATCACTGGCTGCAATCAAACTCCACTTGTCCACTTTGTAGATGTTCCATCATCCCCACTACTACCAAGTTCATCAATCCAGCACCGCCTATTAATATTATATCAGACCCACCCCAGCATGGTGCTATCTTTTCAGACTCTCCATTGCACACTCCATCATTGCCACCTCACTCACAACATCATCATCAACCTGGTGCTTCCTCAAATGCTGCTAATTTGCCAAGGGAATGA 657 0.4505 MSIPQAAAAAAATSPPPHLYPQELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSPHLLPRNIANPPTTTPYHSSPCRLDLTLQFLDKLPRILFDEDLLARDSPCCVCLGEFEVKEEVVQIPYCKHVFHLDCIHHWLQSNSTCPLCRCSIIPTTTKFINPAPPINIISDPPQHGAIFSDSPLHTPSLPPHSQHHHQPGASSNAANLPRE* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00055 218 SUPERFAMILY RING/U-box 92 163 - -
Phac6g00055 218 PANTHER RING-H2 FINGER PROTEIN ATL16 10 182 IPR044600 GO:0016567|GO:0016740
Phac6g00055 218 CDD RING-H2_EL5-like 114 156 - -
Phac6g00055 218 SMART ring_2 114 155 IPR001841 -
Phac6g00055 218 MobiDBLite consensus disorder prediction 193 218 - -
Phac6g00055 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 161 IPR013083 -
Phac6g00055 218 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Phac6g00055 218 Pfam Ring finger domain 114 156 IPR001841 -
Phac6g00055 218 FunFam Putative E3 ubiquitin-protein ligase RHA4A isoform A 83 161 - -
Phac6g00055 218 MobiDBLite consensus disorder prediction 187 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00055 Phac-Chr6 683379 685983 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00055 25 161 C3H Transcription Factor Family AT4G10150 42.336 1.12e-34 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00055 K19039 - gmx:100794298 306.605