Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00052 ATGGCAATGGTTGAGCCTCTTAATGTTACAAGTCTAAGGAATAAGCTCAAGACGCTTTGTGCTGTGGATGGCTGCTCCTACGTCATTTTGTGGCGCATTCATCCTCAAAATACCTTGGTGCTGAGAGTGGAAGATGTATACTGTGAAGATCAATTGGGAGAAGAGATTGTCAACACAGTTCCACATGTCCATTCGATGGGTGAAGGAATTGTTGGTCAAGCTGCTTTGACTGGCAAGCACAGATGGGTGGACTCAGATGGTCAAATGTGTGAGGATGATTATGGTTTGCATCCACAGTTCTTGTCCGGGATAAAGACAGTTGTGGTGATATCTGTTAAACCATGGGGAGTGGTACAATTTGGATCCAAAAAGAAGATTTTGGATAGAGTGAAATTTGTGGAACAAACAGAAAGGTTGTTGAGGGGGATAGAAGATGAGGGTTTGCTTGACGTATTCAATAGTAGTAGAGATCTATATCTAGATTGTGAAAACTATGATCTCAATGGATTGTTGGCTTCCATATCTTCAGAAAATTTATATGATTGGAATCTCAAATCTGTTCATAGTGACAACTCTGAAATGCTATTGGGAAATTCATGTTCCTATGCAAGTCTTGATGACTCCCTCCCTTCCATGGATATGATTCTTGTTGAAGAAGGAACGACACGGATGCATGGATTCTCTTATCTTTGTGACCAATTGGCACCTGCAGTAGAAGCTCAAGCTGTATTCTCGGATAGGGATAGTACTGATTATTCTATGAACACCATAATTTCTAGAAACCCCAGTTTTGGCACATGGAGTGGTGAAATTTCATCATTGAATTCGCTGGGGCAACAAACGGTATCTGAGATAAGGGATGAAGATGTTGAGTATATGCACTGTAAAGAGGCAAATGAATTTTCTAGTAACAAGCTAGCTGTTCAGGATTCAACATTGTCCTCATTAATTAGTTTGAATAGACTGTTAGACCCAACAGGCCCATTTCAATACCACACAGGATTTCCACTAGATATCCAACATTCTGCTCAATCTAGTATTGTGGGAGAAGTTAATTATCCTGATACTTTGAGTATGGTGCATGACCTCCCCAAGGACCTAGAGCCAGTTGATTCATTAGAACAATTTTCAAAGTTCTTCTCCATGAATGATCTCTGCCATTTGTTAGCTCCTTCAGACCACAGCATTTATGGAACAGTGACTGCATTGGATGAGTCACAAGGATGTAATACCCCATCTTTTGGTCTGATTGGTAGTGGTGGCATTGATGATGTTCCAGTCACATATCAAGCTGAGCATAAAAGTTCTATCACAACTACACCCAACATGGATGGTCAAGAAACATACTCAGCTATGCATTGTTCTGAAAACAGTCTCTTGGATAGCATGAGACATCATTTGAGCTGTGACCAAGCCGAGGAGTGGTGGGACAGTGTGGCTATGCTTACACCAGTGGTGAGTGCTGCTGCTACTAACACTGCTTTCTCTGGTTGCATATCAGAGTCAAATGTTGGAACATTTGGCTCTGGAAAGAGATTATTCTCAGAGTTAGGAATTGAAGAGTTTCTTAATGGTTCTAATTTTGGAGATCAACCATCAACCAATAGAAAGCAGAGGACAGAATCTTCACCTGAGAATAGAAATACAAAGCATTTGGCTAGTCATGCTTTGGTTCCTAAATTGGACATGACAAACAATCTTGTAGACCAGAAAGAAATATTCACAAAGTCACAGGTAGGAGTAGGAGGCTTGTGGATAAATGACAGAAATGGAAATACCGGGAGAGCTGATCGGGCAGATGCAAAGCCTCAAAAGGTGGTGGAACACAATAAGGTCACCAGGAAAAGGGCTAGACCAGGTGAAACAACTCGACCGAGACCTAAAGATCGTCAGCAGATTCAAGACCGCATTGGAGAGTTGAGAGGGATCATTCCCAATGGTGGAAAGTGTAGCATTGATTCTTTGTTAGACCGAACCATCAGATACATGATATTCTTACAAAGCATCACCAAGTATGCAGACAAGCTGCAAGAGCCCAGTGAGCCTAAGCTCATTGAGAAGGCAAAAGACAGCAGTGTGGGAGATAGCAAGAAAAGTGGTGGTGGTGTTACATGTGCATTTGAAGTGGAAGGTCAAACAATGGTATGCCCAATTATAGTGGAGGATATGGACCCACCTGGCCAAATGCTTATAGAGATGCTTTTTGAAGAGCAGGGCTCCTTCCTTGAGATAGTGGACATCATTGGTGGGTTTGGATTGAATATCTTGAAGGGAAAGATGGAAATTAGGGACACTAAAATATGGGCACGCTTTATAGTTGAGGCGAACAGACATGTAACAAGGATAGATGTATTTTGGTCCCTCATCAGAGTTGTACAGCAGAAAAACACATCTGGAGCGGATTCACCAAACAGGCATTGTAATATTAATGATGCTGCCTTTTCTTCAATGGACAAATATGAGCAACAGATATGCCAGTACTACCCATGTACATGA 2496 0.4167 MAMVEPLNVTSLRNKLKTLCAVDGCSYVILWRIHPQNTLVLRVEDVYCEDQLGEEIVNTVPHVHSMGEGIVGQAALTGKHRWVDSDGQMCEDDYGLHPQFLSGIKTVVVISVKPWGVVQFGSKKKILDRVKFVEQTERLLRGIEDEGLLDVFNSSRDLYLDCENYDLNGLLASISSENLYDWNLKSVHSDNSEMLLGNSCSYASLDDSLPSMDMILVEEGTTRMHGFSYLCDQLAPAVEAQAVFSDRDSTDYSMNTIISRNPSFGTWSGEISSLNSLGQQTVSEIRDEDVEYMHCKEANEFSSNKLAVQDSTLSSLISLNRLLDPTGPFQYHTGFPLDIQHSAQSSIVGEVNYPDTLSMVHDLPKDLEPVDSLEQFSKFFSMNDLCHLLAPSDHSIYGTVTALDESQGCNTPSFGLIGSGGIDDVPVTYQAEHKSSITTTPNMDGQETYSAMHCSENSLLDSMRHHLSCDQAEEWWDSVAMLTPVVSAAATNTAFSGCISESNVGTFGSGKRLFSELGIEEFLNGSNFGDQPSTNRKQRTESSPENRNTKHLASHALVPKLDMTNNLVDQKEIFTKSQVGVGGLWINDRNGNTGRADRADAKPQKVVEHNKVTRKRARPGETTRPRPKDRQQIQDRIGELRGIIPNGGKCSIDSLLDRTIRYMIFLQSITKYADKLQEPSEPKLIEKAKDSSVGDSKKSGGGVTCAFEVEGQTMVCPIIVEDMDPPGQMLIEMLFEEQGSFLEIVDIIGGFGLNILKGKMEIRDTKIWARFIVEANRHVTRIDVFWSLIRVVQQKNTSGADSPNRHCNINDAAFSSMDKYEQQICQYYPCT* 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00052 831 MobiDBLite consensus disorder prediction 593 632 - -
Phac6g00052 831 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 630 672 IPR036638 GO:0046983
Phac6g00052 831 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 60 137 IPR025610 -
Phac6g00052 831 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 11 824 IPR043561 GO:0003700|GO:0006355
Phac6g00052 831 MobiDBLite consensus disorder prediction 589 632 - -
Phac6g00052 831 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 617 666 IPR011598 GO:0046983
Phac6g00052 831 MobiDBLite consensus disorder prediction 525 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00052 Phac-Chr6 630968 635573 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00052 614 802 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 53.968 1.48e-60 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00052 - - pvu:PHAVU_006G000400g 1643.63