Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00048 ATGGCGGGAGCTACAGGAAGAACCATCTTCACCTTCTTCATCTCTTCCTCTTCTTCTTATTCTTCCTCCACGCGCTTCCTCGCCAAGCGCGTCCCACTCCGCAAACCCCTCCCCCTTGTCCCCCGCCTCCGCCCCCTCTGCTCCGTCGCTGCTGCTCCGGAAACTGCCGACGCGAAGCATTCTTTACTCCTCCAGAGGCTCCGGGCTCGACACCTCAGGGATGCTTCGAAAGTCACCCCCGAACCGAGGAAGAAGGCCAGGGCCGCCACCGTGGCGGAGAAGGAGAACGTGATTGCGACTTTCGAGGAGTTGGGAGTGAGTGAGGAAGTTATGGAGGTGGTTAGGGAAATGGGGATTGAAGTACCAACTGAGATACAGGGAATTGGCATCCCCGCCATTTTGGAAGAGAAGAGTGTCCTTTTGGGGTCGCATACTGGCTCTGGCAAAACCCTCGCCTACTTGCTTCCTCTTGTTCAGTTGCTAAGACGGGATGAACAATTGAATGGAATACTGTTGAAGCCTAGGCGTCCACGAGCGGTTGTGCTGTGTCCCACAAGGGAGTTATCTGAGCAGGTTTTTCGAGTTGCAAAATCGATAAGCCATCATGCACGATTTAGGTGTACCATGGTAAGTGGTGGTGGCCGGATTAGGCCTCAGGAGGATTCCCTTAACAACCCCATTGATATGGTAGTTGGTACCCCTGGCAGGGTTCTTCAGCATATTGAAGAGGGAAACATGGTCTATGGTGACATCAAATACTTGGTATTAGATGAGGCAGACACAATGTTTGATCGGGGTTTTGGTCCTGATATACGCAAGTTTCTGGGCCCATTAAATAGTCGTGCTTCAAAACCTGATGGCCTAGGTTTTCAGACTATCTTGGTAACTGCAACCATGACAAAGGCTGTGCAAAAGCTGATTGATGAAGAGTTTCAAGGCATTGTTCATCTGCGCACATCAACATTGCATAAAAAGATTATTTCTGCTCGTCATGATTTTATTAGACTTTCAGGTTCTGAGAACAAGCTTGAAGCATTACTGCAGGTACTAGAACCAAGCCTCGCAAAGGGTAATAGGGTGATGGTTTTCTGCAATACATTGGATTCTAGTCGTGCTGTGGATCATTTTCTTAGTGAAAATCAGATTTCTAGTGTGAACTACCATGGGGAGGTACCAGCAGAGCAAAGGGTTGAAAATCTCAGAAAGTTTAAGAGTGATGGTGATGATTGTCCTACGTTGGTTTGCACGGACCTGGCTGCTAGGGGTCTAGACTTGGATGTAGATCATGTTGTCATGTTTGACTTCCCCTTGAATTCTATTGACTACCTTCATCGCACAGGTAGAACGGCTCGCATGGGTGCAAAAGGGAAGGTAACAAGTTTAGTTGCTAGAAAGGACTTGGACTTGGCCAGCAAAATAGAGGAAGCAATAAGGAAGAATGAGAGTTTGGAGGCTATCACAAAAGAAAGTGTTAGAAGGGACATTCCAATAACCCAAATCACAGAGCAGAAGGGAAAGGGTAGAAAAATGGTTCAAGTTTCAAAAGTGAAGGGCAAATTTGGTAGTCGTGCCAGTTCTGGGAATAATGGATCAGGTATAAAATCTGGTAAAGGGTCACCAGTGAAATTTATGAAAAAAGGTATTAACGTTTCAAAATCTGGAAAATCTTCTAGTACAAGTAGCACCCTCAGAAAAGGTTCTTCAGAGAAGAGACAAACAAGTAAAGTGGTCCTCAGTAAAGGTTATTCAGAGAAGAGGAAAACAAGTAAAGCGGTGGGTGCCACCAAATCTACAAATTCTAAACTCAACGTTGTGGGGTTTCGGGGGAAAAAGGTTATGGTTATTTCAGAATCTTCCAGTAGTAGATAG 1869 0.4628 MAGATGRTIFTFFISSSSSYSSSTRFLAKRVPLRKPLPLVPRLRPLCSVAAAPETADAKHSLLLQRLRARHLRDASKVTPEPRKKARAATVAEKENVIATFEELGVSEEVMEVVREMGIEVPTEIQGIGIPAILEEKSVLLGSHTGSGKTLAYLLPLVQLLRRDEQLNGILLKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRIRPQEDSLNNPIDMVVGTPGRVLQHIEEGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLNSRASKPDGLGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIISARHDFIRLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLDSSRAVDHFLSENQISSVNYHGEVPAEQRVENLRKFKSDGDDCPTLVCTDLAARGLDLDVDHVVMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVARKDLDLASKIEEAIRKNESLEAITKESVRRDIPITQITEQKGKGRKMVQVSKVKGKFGSRASSGNNGSGIKSGKGSPVKFMKKGINVSKSGKSSSTSSTLRKGSSEKRQTSKVVLSKGYSEKRKTSKAVGATKSTNSKLNVVGFRGKKVMVISESSSSR* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00048 622 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 342 495 IPR001650 -
Phac6g00048 622 CDD DEADc 110 309 - -
Phac6g00048 622 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 130 317 IPR014001 -
Phac6g00048 622 SMART helicmild6 371 453 IPR001650 -
Phac6g00048 622 Pfam DEAD/DEAH box helicase 123 306 IPR011545 GO:0003676|GO:0005524
Phac6g00048 622 Gene3D - 65 318 IPR027417 -
Phac6g00048 622 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 60 490 - -
Phac6g00048 622 MobiDBLite consensus disorder prediction 519 535 - -
Phac6g00048 622 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 473 IPR027417 -
Phac6g00048 622 CDD SF2_C_DEAD 330 462 - -
Phac6g00048 622 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 99 127 IPR014014 GO:0003724
Phac6g00048 622 Pfam Helicase conserved C-terminal domain 342 453 IPR001650 -
Phac6g00048 622 SMART ultradead3 118 327 IPR014001 -
Phac6g00048 622 MobiDBLite consensus disorder prediction 550 579 - -
Phac6g00048 622 Gene3D - 328 496 IPR027417 -
Phac6g00048 622 MobiDBLite consensus disorder prediction 517 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00048 Phac-Chr6 601486 610644 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00048 98 475 Eukaryotic Initiation Factors Gene Family AT3G19760 29.668 1.05e-40 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00048 - - gmx:100805709 881.322