LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac6g00046	ATGGCCTCTTCCCACGTTCTAGAAAAAGACCCCACCTCCAGATACGCGCGGTATGATGAGGTGCTGGGGAAAGGAGCCTTCAAGACTGTATACAAAGCGTTTGACGAAGTGGACGGGATCGAGGTTGCGTGGAACAGGATCAGCGCGGAGGACGTTGTGCAGACGCCGCAGCAGTTGGAGAAGCTGTATTCGGAGGTTCACTTGCTCAAGACCTTGAAGCACGACAATGTCATCAAGTTGTACAATTATTGGATCGATGATACCACCGCCACTGTCAACATGATCACCGAGTTGTTCACCTCCGGGAGTTTGAGGCAGTACCGGAAGAAGCATAAGAATGTGGATATGAAAGCCATCAAGAACTGGGCACGGCAGATTCTCCGTGGGTTGTGTTTTCTGCACAGTCAGACTCCTCCTATCATTCACAGGGACCTGAAATGTGACAATATTTTTGTCAATGGGAATAGTGGACTGGTTAAGATTGGAGATCTTGGATTGGCTATCGTTATGCAACAGCCTACTGCCCGTAGTGTCATCGGTACACCGGAGTTCATGGCCCCAGAGCTTTATGAGGAGGACTACAATGAACTTGTTGACATATATTCCTTTGGTATGTGCATCTTGGAAATGATCACCTGCGAGTACCCGTACAGTGAATGTAAAAATCCAGCTCAGATATATAAGAAAGTTACCTCTGGTATAAAGCCTGCTGCTCTTGCTAAAGTTAATGATCCTGAAGTGAAGCAATTCATAGAGAAATGTCTAGTTCCAGCATCACTGAGACTGTCGGCATGTGAACTACTGAAGGACCCATTCCTTGCAACTGAAAACGCAAAGGAGATCAATCATGATATACTGCAGCTGCCAAATAGTCCTCAAACCAAATTGGTGAACCCACCAATGTGCAAGCCTCATCCCATGGAGATAGATTCTAACTCCAGGCGTAGCTCACCTGGCTCGTCTGTGGGAAGAACTGATGAAACTTCTCAGGTTTCAACTTTTGATCTTGTGAGGATGACTGAGAATAACGAATTTAGGCTAAGAGGGGAGAAAAACGCTGAGAGCACAATTTCACTTACACTGCGAATTGCGGATGCACGTGGTGGAGCAAGGAATATCCATTTTCCATTCTACATCGATTCTGATACAGCAATTTCCATTGCTGAGGAGATGGTGGAACATCTGGAACTCACAAATGAGGATGTATCTGTCATTGCAGAGTTAATACAAGACATGATTGTTAAGCTTTCGCCCAACTGGAAGCCCTTGTGTGAGAACCTCTCGTCTGGGACAGATCATTTGTACAGGACTTCTTCAGAAGCTCAGAATGATGAACAGTTGAGCTGTCATTGGCCATTACAATCAAGTGATTACGACATGAAGACGATGTATGAGGATCTGGTTCGTCCAGGGCCTGTGGATGGAGGTTATCAGGAGAAACAAGAATCTGTTATGTCAGATATATCAGCAGAGTGTGGGATTACGATTGCCTCAGATTCTAAAGATGTGGAACCCGACATTTTTATTTTTGATGAATTCTGGGAGGGGTTCGATGTATTCAATTCCAATTCAGATGACAGGTTTAGTGGGCAAGAGGATGGACAAAAGAATCAATCAGAGAACTCAGCAGGCTCTCTGATCAATTCATGTTGCAGCCCATCCAAAAACTTCGATATGTCAAGCACAAGTTCTCTCAATCTAGTTGACAAAGACCCTTCAGACGAGCTGCAGTTGGAGCTTGAAGCAATAGAAACACAGTATCAACAATGCTTTCATGAGCTAGTGAAGATGAGGGAGGAAGCTATAGAGAATGCAAAAAGGAGATGGATAACAAGGAAGAAAATACCGGCTACGTGA	1857	0.4486	MASSHVLEKDPTSRYARYDEVLGKGAFKTVYKAFDEVDGIEVAWNRISAEDVVQTPQQLEKLYSEVHLLKTLKHDNVIKLYNYWIDDTTATVNMITELFTSGSLRQYRKKHKNVDMKAIKNWARQILRGLCFLHSQTPPIIHRDLKCDNIFVNGNSGLVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEDYNELVDIYSFGMCILEMITCEYPYSECKNPAQIYKKVTSGIKPAALAKVNDPEVKQFIEKCLVPASLRLSACELLKDPFLATENAKEINHDILQLPNSPQTKLVNPPMCKPHPMEIDSNSRRSSPGSSVGRTDETSQVSTFDLVRMTENNEFRLRGEKNAESTISLTLRIADARGGARNIHFPFYIDSDTAISIAEEMVEHLELTNEDVSVIAELIQDMIVKLSPNWKPLCENLSSGTDHLYRTSSEAQNDEQLSCHWPLQSSDYDMKTMYEDLVRPGPVDGGYQEKQESVMSDISAECGITIASDSKDVEPDIFIFDEFWEGFDVFNSNSDDRFSGQEDGQKNQSENSAGSLINSCCSPSKNFDMSSTSSLNLVDKDPSDELQLELEAIETQYQQCFHELVKMREEAIENAKRRWITRKKIPAT*	619

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac6g00046	618	CDD	STKc_WNK	14	273	-	-
	Phac6g00046	618	MobiDBLite	consensus disorder prediction	524	545	-	-
	Phac6g00046	618	MobiDBLite	consensus disorder prediction	295	332	-	-
	Phac6g00046	618	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	140	152	IPR008271	GO:0004672\|GO:0006468
	Phac6g00046	618	FunFam	probable serine/threonine-protein kinase WNK9	99	278	-	-
	Phac6g00046	618	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED	7	600	-	-
	Phac6g00046	618	Pfam	Oxidative-stress-responsive kinase 1 C-terminal domain	357	413	IPR024678	GO:0004674\|GO:0005524
	Phac6g00046	618	Gene3D	-	355	449	-	-
	Phac6g00046	618	ProSiteProfiles	Protein kinase domain profile.	16	273	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac6g00046	618	Pfam	Protein kinase domain	19	273	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac6g00046	618	MobiDBLite	consensus disorder prediction	311	332	-	-
	Phac6g00046	618	Gene3D	Transferase(Phosphotransferase) domain 1	99	281	-	-
	Phac6g00046	618	SMART	serkin_6	16	273	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac6g00046	618	Coils	Coil	573	600	-	-
	Phac6g00046	618	FunFam	Probable serine/threonine-protein kinase WNK1	1	97	-	-
	Phac6g00046	618	Gene3D	Phosphorylase Kinase; domain 1	2	97	-	-
	Phac6g00046	618	SUPERFAMILY	Protein kinase-like (PK-like)	18	317	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac6g00046	Phac-Chr6	583103	586880	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac6g00046	1	614	MAP Kinase Kinase Kinase	AT5G41990	51.954	0.0	582

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	WNK_NRBP	Phac6g00046		Pkinase	6.6e-52	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac6g00046	K08867		-	gmx:100783717	1030.01