Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02767 ATGAAGCTCACCGTGAAAACTTTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTATTATGGCTGTCAAGAAAAATATTGAAGATGTACAAGCCAAAGATAATTACCCATGTGGACAGCAATTGCTGATTCACAATGGTAAGGTTTTGAAAGATGAAACTACATTAGCAGACAATAAGGTCTCTGAGGATGGCTTTCTTGTTGTAATGCTTAGTAAGCCGCCGCCACCACCACCATCTTCATTGCCGGCAGATCAAAATGAGCCAAACATGACTGTGGCCATACACCGCTATACAGACACGACTGAGTTTTGGTTTGGTGAAGTGGTTGGAGTGGCCACGATCCTGGTGCAGCAGAGCAGCAATCCCGCTGAGCAGTTTCTTGTCCGTGGCACTGAAGATGTCATTTTCTCATTCCACTCTCTCTGTCTTTTCTCCTTCCCTGCTGTTCCATACTATCACGCAGTCAAAGTAAAACCTTGGGATCTGCTGCTTGCTAGCAACCCACCTACAACTGTATCAACACCAAATTCGCCGTCTCTAGTTCAAACCCAATCTACAAACAACAATGCACCTGCAAGAGATGTCACAACTACAGATGTGACTACGGATACTTATGGCCAGGCTGCTTCAAATTTAGTTGCTGGTAGTAATCTTGAGCAGACTATTCAGCATATTATGGACATGGGTGGTGGCAGTTGGGACAGAGATACAGTTAGTCGTGCCCTCCAAGCAGCTTACAATAACCCAGAGCGTGCTGTGGATTACCTGTATTCTGGAATTCCTGAAGCAGCAGAAATTGCTGTGCCAGCTGCTCCTTACCCAGATAGTCAGACAACTGAAACAGGTGGGGTCACTGCCGGAGCTGTTCCTGGGGTCCCTAACTCATCTCCCTTGAATATGTTTCCACAGGAGGCAATTTCTGGTGTTGGAGCTGGAATTGGGTCGCTTGACTTTCTTAGAAACAATCCCCAGTTTCAAGTATTGAGATCAATGGTGCAATCCAATCCACAAATTCTGCAGCCCGTACTTCAGGAGCTTGGAAAGCAGAATCCTGGTCTCTTAAGAGTAATTCAAGAACATCATGCTGAGTTTCTGCAGTTGATTAATGAACCTATTGAGGGTTCAGAAGGTGATATATTTGATCAACCTGAGCAAGACATGCCTCATGCTATCAATGTGACGCCAGCTGAGCAGGAGGCAATTGGAAGGCTTGAAGCTATGGGATTTGATAGAGCCTCAGTCATAGAGGCATTTTTAGCATGTGACCGTGACGAGCAATTGGCAGCCAACTACTTATTAGAAAATGCTGGAGATTTTGAGGATTAA 1338 0.4537 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQAKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKPPPPPPSSLPADQNEPNMTVAIHRYTDTTEFWFGEVVGVATILVQQSSNPAEQFLVRGTEDVIFSFHSLCLFSFPAVPYYHAVKVKPWDLLLASNPPTTVSTPNSPSLVQTQSTNNNAPARDVTTTDVTTDTYGQAASNLVAGSNLEQTIQHIMDMGGGSWDRDTVSRALQAAYNNPERAVDYLYSGIPEAAEIAVPAAPYPDSQTTETGGVTAGAVPGVPNSSPLNMFPQEAISGVGAGIGSLDFLRNNPQFQVLRSMVQSNPQILQPVLQELGKQNPGLLRVIQEHHAEFLQLINEPIEGSEGDIFDQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02767 445 CDD UBA1_Rad23_plant 216 265 - -
Phac5g02767 445 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Phac5g02767 445 PRINTS DNA repair protein Rad23 signature 427 442 IPR004806 GO:0006289
Phac5g02767 445 PRINTS DNA repair protein Rad23 signature 346 368 IPR004806 GO:0006289
Phac5g02767 445 PRINTS DNA repair protein Rad23 signature 395 411 IPR004806 GO:0006289
Phac5g02767 445 PRINTS DNA repair protein Rad23 signature 412 426 IPR004806 GO:0006289
Phac5g02767 445 Gene3D - 215 265 - -
Phac5g02767 445 FunFam UV excision repair protein RAD23 B 310 376 - -
Phac5g02767 445 Gene3D - 392 440 - -
Phac5g02767 445 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 434 - -
Phac5g02767 445 SMART ubq_7 1 75 IPR000626 GO:0005515
Phac5g02767 445 FunFam UV excision repair protein RAD23 homolog 392 440 - -
Phac5g02767 445 SMART CBM 318 361 IPR006636 -
Phac5g02767 445 Gene3D - 311 375 IPR036353 GO:0003684|GO:0006289|GO:0043161
Phac5g02767 445 Pfam UBA/TS-N domain 401 436 IPR015940 -
Phac5g02767 445 Pfam UBA/TS-N domain 222 260 IPR015940 -
Phac5g02767 445 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 399 439 IPR015940 -
Phac5g02767 445 SUPERFAMILY UBA-like 380 442 IPR009060 GO:0005515
Phac5g02767 445 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Phac5g02767 445 Gene3D - 1 76 - -
Phac5g02767 445 FunFam UV excision repair protein RAD23 1 80 - -
Phac5g02767 445 SUPERFAMILY UBA-like 219 269 IPR009060 GO:0005515
Phac5g02767 445 FunFam UV excision repair protein RAD23 homolog 215 265 - -
Phac5g02767 445 SUPERFAMILY XPC-binding domain 318 383 IPR036353 GO:0003684|GO:0006289|GO:0043161
Phac5g02767 445 CDD Ubl_Rad23 1 73 - -
Phac5g02767 445 SUPERFAMILY Ubiquitin-like 1 93 IPR029071 -
Phac5g02767 445 NCBIfam UV excision repair protein Rad23 172 444 IPR004806 GO:0006289
Phac5g02767 445 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 220 263 IPR015940 -
Phac5g02767 445 SMART uba_6 401 438 IPR015940 -
Phac5g02767 445 SMART uba_6 222 262 IPR015940 -
Phac5g02767 445 Pfam XPC-binding domain 320 375 IPR015360 GO:0003684|GO:0006289|GO:0043161
Phac5g02767 445 MobiDBLite consensus disorder prediction 175 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02767 Phac-Chr5 44308553 44314597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02767 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 41.892 1.60e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02767 K10839 - csav:115699759 497.664