LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac5g02764	ATGAAGAAGACGAATGAGTTTTCAGTTTCAACCACACGCACTTACAGTTCTCTCTATTTGAATCCTCTGAACCACCCCACCCACTGCCGGAGCTACAGCTCCGACTATGTCCCCAAACCTCACTTTGAATTTCAGGATCACCACCCCGACAAGGAAAACCAAGATGCCAATGCCACCATGCCCAAGCCCTTCAGGTCTCTCTCCACTCACAGGATCTTCAAGCCCTCCTCCCTTCAATTCTGCATGCAAATGAACAACCTTCAAACCTCCCTCAACATTTGGGACTACTCTGATTCCGAGTCAGCTCCTGCTTCCTCTTGGTCCACACTGCCCAACAAGTACTTGATCTGTAGACCCTTGCCATTAGATGTTGGAAGGTGCAGTTGTTTTATTCTCAAGGAGCCAACGCCCCATGGAATTTCAGGGGGCAATTTCTTCTCTCTTTATACCAATGAAGGCCAGGGAAGGCAGAACAGGAAACTAGCTGTGGCCCTCCACAAACGGCGGAATGGGAGGTCTTACTTCACCATTGCTCAGAATGTAAAAGGACTGCTCTCCCATTCTGATGATACTTTTCTTGGCACTGTAACAGCTAACCTCATGGGCTCAAAATACCACATTTGGGATCAGGCATATCGTCATAATTCCTGTGCTGAACAACCAAAGCCACCTCTTGCTGTTGTGAGCTACATACCTACCATAACAACATGTACAGGAAGTCACAGAAGCATGAGGGCGTATGTACCCAAGCATCAATACATGCCACTGAAGAACACAACCCAGGTACAACATGTAAAAGGATTGCCAATGAAGTGGGAGGGAAAGCTGGACAAAGTCCATCAACTGTTCTCAAAGGCTCCACTTTACAACAAGATTTCAAAGCAATATGAGCTTGACTTTAGAGATAAAGGAAAGACGGGCCTCAAAATCCAAAGATCGGTTAAAAATTTTCAGCTAACTTTAGAGGAGAATGGGAGTCAGACGATACTGCAGCTAGGGAGGGCAGGAAAATCAAAATTCGTTATGGACTACAGGTACCCTTTGACAGGTTACCAGGCGTTTTGCATGTGCTTGGCTTCAATGGATGCAAAGCTTTGTTGCACAGTGTAA	1110	0.4613	MKKTNEFSVSTTRTYSSLYLNPLNHPTHCRSYSSDYVPKPHFEFQDHHPDKENQDANATMPKPFRSLSTHRIFKPSSLQFCMQMNNLQTSLNIWDYSDSESAPASSWSTLPNKYLICRPLPLDVGRCSCFILKEPTPHGISGGNFFSLYTNEGQGRQNRKLAVALHKRRNGRSYFTIAQNVKGLLSHSDDTFLGTVTANLMGSKYHIWDQAYRHNSCAEQPKPPLAVVSYIPTITTCTGSHRSMRAYVPKHQYMPLKNTTQVQHVKGLPMKWEGKLDKVHQLFSKAPLYNKISKQYELDFRDKGKTGLKIQRSVKNFQLTLEENGSQTILQLGRAGKSKFVMDYRYPLTGYQAFCMCLASMDAKLCCTV*	370

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac5g02764	369	Pfam	Tub family	118	362	IPR000007	-
	Phac5g02764	369	Gene3D	Tubby Protein; Chain A	108	368	IPR025659	-
	Phac5g02764	369	SUPERFAMILY	Tubby C-terminal domain-like	104	368	IPR025659	-
	Phac5g02764	369	PRINTS	Tubby superfamily signature	346	368	IPR000007	-
	Phac5g02764	369	PRINTS	Tubby superfamily signature	192	216	IPR000007	-
	Phac5g02764	369	PRINTS	Tubby superfamily signature	325	344	IPR000007	-
	Phac5g02764	369	PRINTS	Tubby superfamily signature	305	321	IPR000007	-
	Phac5g02764	369	PANTHER	TUBBY-RELATED	81	366	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac5g02764	Phac-Chr5	44302078	44304520	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac5g02764	64	262	TUB Transcription Factor Family	AT1G16070	53.425	1.50e-78	241

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	TUB	Phac5g02764		Tub	2e-40	CL0395

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac5g02764	K19600		-	gmx:100803500	525.398