Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02730 ATGTGGAGTTCAACTTCAAGCGCAGCGATTGCAGCACCCTCCTCCGACGAGGATCCCAGCGAATCCTCTTCGTCTTCCTTCTCCACCTCTCTCTTCAATTTCTCTTCTGGAAACCCTAGAATCGAGGAGACGCGCGGCCTCATGCATCTCTTCCCCGACGACATTCCGGCTACTCTTCCGGTTGGACGCAAACCTCTAGTTTGCGTTGTTGGCGTCCCCAATCACATGACCTATGCGGATTTCTGTCAGTTCAGTGGTTCCTTCATTCAGCACATGCTGGAGATGCGCATTGTTAGGATGGATGGTATGGAGGATCAGTACAGTGTCTTGATTCGCTTTGACTGCCAAGAATCCACCGACAGCTTCTACAAGCACTACCATGGCCGCCGATTCTCCTCTCTCGAGGTTGAGGTTTGCCGAGTTCTTTTCACGTTAGACGTGCAGTACACTGGCTCCATTGAACATGCACAACCCTCAAATGCTAGTTCAACTGAACAGCCTACTTGTCCTGTTTGTCTTGAACGATTAGATCAGGACACCGGTGGAATTCTTACAACTATATGCAACCATTCTTTCCATTGTTCTTGTATTTCAAAATGGGCAGATTCTTCTTGTCCTGTATGCCGCTATTGCCAGCAGCAAGCTGAAAAATCGATATGTTTTGTTTGTCAAACCACTGAGAACCTGTGGATATGTGTTATATGTGGGTATGTTGGCTGCGGAAGATACAAGGGAGGTCATGCTATAATACACTGGAAAGAGACACAGCATTGCTACTCTCTAGAAGTGGAAACCAAACGTGTGTGGGATTATGTGGGAGACAACTATGTTCATAGACTTATTCAGTCCAAAACTGATGGGAAATTGGTTGAGCTGAACACTCACTGTGCACACGCAGACAATGGATGCGGAAGTTGCAGCTGTGAAGATAATGCCATGAGTGAGGCTATGCTTAATAGTAAAGTTGAAGCTATTGTCAATGAGTACAATGAATTGCTTGCTACTCAACTTGAAAACCAAAAAATATATTTCGAATCCTTATTACAAGAAGTAAAAGAAGAATCTGAAAGAAAAATTTCCAAAGCTGTTCAGAAGGCTATCAGTCTTAAACAGCAGAAGATTCAGTCCAAGATTGACAGATGTAAGAAAGAGAAGAAATTTCTGGATGATCTTAATGAGAATCTTGTGAAAAATGAGGACATTTGGAAAGCAAAGATACTAGAGATTGAAGAGAGGGAGAGAAAAGCTACGAGACTGATGGAGGATAGAGTAGCGGACCTGGAAAAGCAGGTGAAGGATACCGTTTTCCAAATTTCTCATTTTTCTTAG 1329 0.4372 MWSSTSSAAIAAPSSDEDPSESSSSSFSTSLFNFSSGNPRIEETRGLMHLFPDDIPATLPVGRKPLVCVVGVPNHMTYADFCQFSGSFIQHMLEMRIVRMDGMEDQYSVLIRFDCQESTDSFYKHYHGRRFSSLEVEVCRVLFTLDVQYTGSIEHAQPSNASSTEQPTCPVCLERLDQDTGGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLWICVICGYVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNTHCAHADNGCGSCSCEDNAMSEAMLNSKVEAIVNEYNELLATQLENQKIYFESLLQEVKEESERKISKAVQKAISLKQQKIQSKIDRCKKEKKFLDDLNENLVKNEDIWKAKILEIEERERKATRLMEDRVADLEKQVKDTVFQISHFS* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02730 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 213 293 IPR013083 -
Phac5g02730 442 Pfam Zn-finger in ubiquitin-hydrolases and other protein 220 279 IPR001607 GO:0008270
Phac5g02730 442 CDD RRM_BRAP2_like 67 148 - -
Phac5g02730 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 212 IPR013083 -
Phac5g02730 442 SMART Zf_UBP_1 219 268 IPR001607 GO:0008270
Phac5g02730 442 ProSiteProfiles Zinc finger RING-type profile. 169 209 IPR001841 -
Phac5g02730 442 CDD RING-H2_BRAP2 167 210 IPR047243 -
Phac5g02730 442 ProSiteProfiles Zinc finger UBP-type profile. 203 296 IPR001607 GO:0008270
Phac5g02730 442 Coils Coil 378 398 - -
Phac5g02730 442 Pfam BRCA1-associated protein 2 60 156 IPR011422 -
Phac5g02730 442 MobiDBLite consensus disorder prediction 1 24 - -
Phac5g02730 442 SMART ring_2 169 208 IPR001841 -
Phac5g02730 442 Coils Coil 334 372 - -
Phac5g02730 442 Pfam Ring finger domain 168 209 IPR001841 -
Phac5g02730 442 SUPERFAMILY RING/U-box 185 284 - -
Phac5g02730 442 PANTHER BRCA1-ASSOCIATED PROTEIN 10 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02730 Phac-Chr5 44160388 44163610 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02730 165 209 C3H Transcription Factor Family AT1G72220 46.809 6.49e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02730 K10632 - gmx:100794688 806.594