Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02728 ATGGACTTTCTCCTTTCCCCTGCTTTCTACTCTCCGATGGAGCAAGAGTGGGAGAATTGGTCTCTTCAAATGGAAAAGGGTGGTGATGGGTGTAAGGATCTGATGTTAGAAGAGTGCCACACAGAAGAAGAAGAAGAGTTTCTGAGGGACATTCTTGGTGAGCCTGGTTTTTGTTCTGAAACTCAAAGTCACCACAACTCTGCAACGCCCACTGATGGTAGCAGTTTATCCTCTGATGAGACGCTAACAATGGCAGCCTCCAATGTCAATATAGCTCCCCAGAGGTCCCACATCGCTAATTCCTCTCCAAGAACATATATTTTGTCTTTTGATACCTCCACCATTATTCCACCCACCCCTCATTTCGATACCTCTAAATCATCATCATCCTCTTCCACTCTCTCCTCCAAAAAACGCCACCGGAATCTGAACTCAGAACCACCAAAACCAAACGCCACCACCCAAAAGAGGGGCAGAAACGGTTCCCTTGAACACATCATGGCCGAAAGAAAAAGGAGACAAGAACTCGCCGAGAGGTTCATAGCACTTTCAGCCACCATTCCTGGCCTCAAGAAGACGGACAAGAGTTCAATACTTTGCGAAGCGATTAATTACGTGAAAGAGCTTCAAGGACGTGTGACGGAGCTTGAAGAGAGAAACAAGAGAGGGAAAGAAGCAGTGATGATCCTGAAGAAGAGTGATGTGTGTGGAAACGAAGCTAGTAGTAACTCCAGTGAAACAGACCCCAAAGATTGGTGCAGAATGCTCCCTGATATTGAAGCAAGAGTGATGGAGAATGAGGTGCTCATTGAGATCCACTGCGAGAAGGAAGAAGGAGTTGAGCTCAAATTATTGGACCATCTCGAAAATCTTCATCTCTGTGTCACCGCCACCAGCGTTTTGCCCTTCGGGAATTCAACTCTTGGCATCACCATTGTCGCTCAGATGAGTGATGCATACAAGATGACAATGAAGGAGGTAGTGAGAAATGTAAGGGAAGTGCTGATGAACGAAATGAACATCCATGGCGATCCGTACTAG 1041 0.463 MDFLLSPAFYSPMEQEWENWSLQMEKGGDGCKDLMLEECHTEEEEEFLRDILGEPGFCSETQSHHNSATPTDGSSLSSDETLTMAASNVNIAPQRSHIANSSPRTYILSFDTSTIIPPTPHFDTSKSSSSSSTLSSKKRHRNLNSEPPKPNATTQKRGRNGSLEHIMAERKRRQELAERFIALSATIPGLKKTDKSSILCEAINYVKELQGRVTELEERNKRGKEAVMILKKSDVCGNEASSNSSETDPKDWCRMLPDIEARVMENEVLIEIHCEKEEGVELKLLDHLENLHLCVTATSVLPFGNSTLGITIVAQMSDAYKMTMKEVVRNVREVLMNEMNIHGDPY* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02728 346 MobiDBLite consensus disorder prediction 146 160 - -
Phac5g02728 346 MobiDBLite consensus disorder prediction 118 138 - -
Phac5g02728 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
Phac5g02728 346 MobiDBLite consensus disorder prediction 59 78 - -
Phac5g02728 346 Coils Coil 206 226 - -
Phac5g02728 346 Gene3D - 151 225 IPR036638 GO:0046983
Phac5g02728 346 SMART finulus 166 215 IPR011598 GO:0046983
Phac5g02728 346 Pfam Helix-loop-helix DNA-binding domain 164 210 IPR011598 GO:0046983
Phac5g02728 346 MobiDBLite consensus disorder prediction 55 78 - -
Phac5g02728 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 228 IPR036638 GO:0046983
Phac5g02728 346 PANTHER BHLH TRANSCRIPTION FACTOR 9 337 - -
Phac5g02728 346 MobiDBLite consensus disorder prediction 118 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02728 Phac-Chr5 44145702 44147839 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02728 157 337 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.324 1.40e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac5g02728 HLH 8.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02728 - - pvu:PHAVU_005G181300g 594.734