Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g02646 ATGGAGGCACAAGCAGCACAGACACACCATTTCCGAAACTCAACAGAATCAGAAAAGCATAACAGTAATAATAATCACCACAACAATCATAACAATAATCGTAACTTGATGGTGAAGACTGAGTTGTGCAGGAGATTCAGGAGAGGCGTGTGCGGTCATGGAATCAAATGCGATTACGCTCACAGCGTCGGGGAGCTCCGACGCCAACCCAAACTGTGCAGATTGTTCCTTCAAAACAAACACTGCCCCTACGGACGCACCTGTCGCTACCTGCATTCAGCCGCAACACCGCTACCACCACCACCGTCAACTTTTCCGATTCCAAATCCACAATCTCAACCAGAAGTAGGGCAACTTGATCGCTCCTCTTCTGCCGAATACAAGAGAATGCAAACTTCTGCTGTTGTTCCAAGTGATAGCTACCCTTCTGTAGAAAATAGTACAATGCAAACGGCTATTGCTGCTACTGCAAATGCCTCAACTAGCACTCTGGCAGCTGGCTCTTCCCATAAGAATGAACCATATGCTGTGAAGTTCGTGTTCAAGAAAAACGAACTAAAAAAGATCAATCGCATCTATGCTGATTGGATTTCAGATTTATCCCGCTGA 609 0.4581 MEAQAAQTHHFRNSTESEKHNSNNNHHNNHNNNRNLMVKTELCRRFRRGVCGHGIKCDYAHSVGELRRQPKLCRLFLQNKHCPYGRTCRYLHSAATPLPPPPSTFPIPNPQSQPEVGQLDRSSSAEYKRMQTSAVVPSDSYPSVENSTMQTAIAATANASTSTLAAGSSHKNEPYAVKFVFKKNELKKINRIYADWISDLSR* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g02646 202 SMART c3hfinal6 37 63 IPR000571 GO:0046872
Phac5g02646 202 SMART c3hfinal6 67 94 IPR000571 GO:0046872
Phac5g02646 202 Gene3D - 29 69 - -
Phac5g02646 202 Gene3D - 70 96 - -
Phac5g02646 202 MobiDBLite consensus disorder prediction 99 119 - -
Phac5g02646 202 PANTHER CCCH ZINC FINGER/TIS11-RELATED 33 170 IPR045877 GO:0003729
Phac5g02646 202 SUPERFAMILY CCCH zinc finger 69 94 IPR036855 GO:0046872
Phac5g02646 202 ProSiteProfiles Zinc finger C3H1-type profile. 67 95 IPR000571 GO:0046872
Phac5g02646 202 ProSiteProfiles Zinc finger C3H1-type profile. 37 64 IPR000571 GO:0046872
Phac5g02646 202 SUPERFAMILY CCCH zinc finger 36 68 IPR036855 GO:0046872
Phac5g02646 202 MobiDBLite consensus disorder prediction 1 35 - -
Phac5g02646 202 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 39 62 IPR000571 GO:0046872
Phac5g02646 202 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 71 93 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g02646 Phac-Chr5 43748239 43752846 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g02646 37 95 C3H Transcription Factor Family AT1G68200 40.299 7.44e-10 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phac5g02646 zf-CCCH 8.5e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g02646 - - vun:114185879 275.404